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Hi, I would like to try using CarveMix on BRATS 2021 dataset. Can you please describe the steps I need to follow to make it work with nnU-Net? You wrote that we need to determine the data partition b…
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The brats file I have has only one modality, t1ce. In this case, can't we teach nnunet?
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Hi,
I'm trying to run `remove_connected_components.py` to apply postprocessing to BraTS dataset which is region-based.
There is error when running:
` baseline_results = load_summary_json(join(…
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My problem comes in when it's done training; it does prediction then it outputs this message:
![Screenshot from 2023-07-15 17-03-52](https://github.com/MIC-DKFZ/nnUNet/assets/50427374/00784628-bc25-4…
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Hi Isensee,
Thanks for this amazing work. I just start to run the 3D UNet code. I have a question when training multi-modality images. I just wonder how does the code of nnUNet handle multi-modalit…
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Hi, I see in your paper that the FLOPs obtained using nnformer in Brats are about four times larger than your architecture, which is not the case if I calculate it myself in nnFormer, what am I doing …
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Hi I am trying to run the nnUNetv2_find_best_configuration and getting this error.
the 3d fullre is traind for all five folds and I am able to do the inference too but while I am trying to run the be…
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I downloaded the braintumour dataset from https://drive.google.com/drive/folders/1HqEgzS8BV2c7xYNrZdEAnrHk7osJJ--2 and using the Task082 to convert the dataset. But it return nothing and no file is …
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Hello again. I was wondering whether it is normal behaviour to get an error trying to sample using ddiim with `--use_ddim True`. Do you have to change anything in the training process in order to able…
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Hi, everyone!
1. My inputs have for modaliteis t1,t2,t2 flair, and t1-ce (P070_0000.nii.gz P070_0001.nii.gz P070_0002.nii.gz P070_0003.nii.gz
)in a directory/home/curtsohn/deepseg_env/nnUNet_b…