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When building version 1.30.0 with R 3.6.0 this happens:
```
* installing *source* package ‘ggbio’ ...
** using staged installation
** R
** inst
** tests
** byte-compile and prepare package fo…
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Hello -
I was trying to analyze some scATAC data (alongside matching scRNA-seq samples) based on the Seurat vignette. I ran into an issue when trying to RunLSI that said the function has been migr…
kmhum updated
4 years ago
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Hi timoast,
Thank you for developing this nice tool. I encountered some problems when doing the motif analysis. Can you give me some ideas about why this happened? Thanks.
Jason
1. There is t…
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Hi, I am having a recurring problem with CCA when I try to integrate scATAC and scRNAseq data. This occurs both with my own data and the data provided in the vignette here: https://satijalab.org/signa…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/zh9118/GenomicOZone
Confirm the following by edit…
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Hi - loving your new tool.
Just a quick q - when running snifflesKaryogram get the following error:
> > snifflesKaryogram("org_662_SV.vcf")
> Scanning file to determine attributes.
> File attr…
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I have a problem with ggbio 1.26.0 which depends on rsamtools 1.32.3
When I do: `conda install bioconductor-ggbio`
It installs:
```
bioconductor-ggbio: 1.26.0-r3.4.1_0 bioconda
…
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#2584
Problem occurs in: FourCSeq, Rariant, RiboProfiling, Single.mTEC.Transcriptomes
From a quick look it seems that some interaction with ggbio might be the cause
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Hello, I am using ggbio to print the reads aligned and the coverage. I am using this bam file:
>samtools view -H 20171024.bam
@HD VN:1.3 SO: coordinate
@SQ SN:D_HS_LSU_modif LN:5071
@PG ID:minim…