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I noticed some hypergraphs from the benchmark set provided on http://algo2.iti.kit.edu/schlag/sea2017/ contain nodes that have no hyperedges/nets associated with them. For example, the hypergraph “Mar…
JMian updated
2 years ago
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Dear MATCHA authors,
Thanks for your great efforts. I currently try to reproduce your code before I further utilize it. According to the readme https://github.com/ma-compbio/MATCHA/tree/master/Hist…
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I've been running into the error "Invalid object identifier" when calling KaHyPar both through the standalone program and the Python interface. I have been able to compile and run the standalone progr…
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We frequently have need for what can be viewed as ternary or n-ary relationsips between >2 entities. Examples:
* gene correlated with gene (in a specific tissue) see #324
* chemical derived fro…
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## ❓ Questions & Help
Hi, it's very nice to find the hypergraph convolution implementation here, however, i found something confused in HypergraphConv class codes.
The hyperedge_index in forward/…
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Hi,
I divide a vertex set of size 1152 into 9 vertex subsets, each of which is theoretically exactly 128 in size. However, when I set the imbalance parameter to 0, the division results are shown belo…
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I made the following diagram using Hypernetworkx's `draw` command.
The node `fst_s…
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Hi,
I understand that support for Weighted Hyperedges was asked in [this](https://github.com/pnnl/HyperNetX/issues/35) issue.
However, the [last question](https://github.com/pnnl/HyperNetX/issues…
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## ❓ Questions & Help
Hello! I'm trying to use HypergraphConv with hypergraphs of varying sizes, therefore I need the weight matrix to be independent of the number of vertices. How can I achieve t…
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We could add that with the group size as argument.
This would go in `xgi/classes/function.py`?