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While I appreciate the Douglas Adams tribute, I wanted to raise the possibility of (1) changing the default murmurhash seed value to 0 (default in many bindings) and/or (2) exposing it as a command li…
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I just gotten a bizarre error with canu1.6 (downloaded from git on Oct17th). It seems canu is unable to detect the read type from my input command?
-nanopore-raw doesn't work either with the raw da…
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Hi,
I've been trying use can-1.6 on metagenomic nanopore reads corrected using `nanocorr`. I seem to get the following error (log file pasted below). Am not sure if am missing the obvious.
Below…
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Ran the command and had the below issue but not really sure where to look and what to solve as I am not sure what the problem is. Canu is newly installed on this machine and I have never managed to ge…
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Hi,
I'm having a similar issue like #546: https://github.com/marbl/canu/issues/546
The assembly step stops with the following error:
```-- Canu 1.6
--
-- CITATIONS
--
-- Koren S, Walenz BP, Be…
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I'm running canu 1.6 released version.
I am running all 3 steps (correction, trimming, assembling) separately. I am assembling nanopore data.
I am trying to trim the corrected data that was produc…
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Hi, I keep on getting this error when running Canu.
```
-- Running jobs. First attempt out of 2.
----------------------------------------
-- Starting 'bat' concurrent execution on Fri Jul 7 04:0…
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Hello,
I am running latest version of canu on MacOS
I try to start trim the reads.
Here is the command that I put in:
```
sudo /var/log/MinKNOW/canu/Darwin-amd64/bin/canu -trim \
-p DB146_6_…
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Hi I am using Canu 1.6 on a remote cluster with SGE resources. I have no problem running Canu without using SGE.
The problem rises when I try to use SGE resource:
* firstly, Canu can't configure…
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Motivated by #1441 we investigated different ways to store hash values with more than 64bits. This would allow you to have reversible hashing for k>32 k-mers.
Trial PRs:
* #1444
* #1455
* #148…