-
```
> nextflow run nf-core/eager -with-singularity /apps/containers/nf-core-eager.simg --pairedEnd --reads "/path/sample_{1,2}.fastq.gz" --trim_bam 3 --max_time 12.h --max_cpus 4 --max_memory 32G --…
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I have been thinking a lot about this and I've come up with this solution for how to make a `travis.yml` better.
## Problem
Right now, whenever a new pull request is submitted, travis is forced …
-
## Bug report
Hi
As suggested in the gitter I open a issue for this.
### Expected behavior and actual behavior
After configuring a instance of my private server in the `$HOME/.nextflow/…
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## Bug report
Out of curiosity, I installed Singularity v3.0.0 which just came out for testing purposes. There are some command that switched behaviour which I'm going to list here for further ref…
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nextflow uses [the following configurations for singularity]((https://www.nextflow.io/docs/latest/singularity.html)):
```
process.container = 'file:///path/to/singularity.img'
singularity.enabled…
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Running the command
```
nextflow run nf-core/hlatyping -profile singularity,test --outdir $PWD/results
```
locally, does not pull the container from Singularity Hub, but Docker Hub and result in …
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Separated from an earlier offline discussion: I think perhaps
```
[global]
parameter: container_type = "docker"
[default]
bash: container = f'{container_type}:gaow/debian-ngs'
```
is mor…
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Hello,
I noticed that the 1.0 release is out, but I cannot download the singularity container for this version
I tired this command:
```bash
singularity pull --name nfcore-rnaseq-1.0.img docke…
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As of release 0.30.2, something has broken with nextflow access to gitlab. This call:
`nextflow run SGI-Pipelines/nextflow_transcriptomics -hub gitlab -resume -params-file params.yml -latest -r 1.…
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Hello,
I'm trying to run the pipeline on Hebbe (C3SE), but I have some problems with the configuration, which makes the pipeline fail at the process genebody_coverage and markDuplicates due to memory…