-
Most of the OMOP standardized clinical data tables have a mandatory `type` concept_id field (e.g. `procedure_type_concept_id`), which describes where the data is derived from. As there is currently no…
-
I executed this sequence:
~~~
babel -ipdb az.pdb -omop az_opt.mop -xk "PM6"
mopac az_opt.mop #this is an alias for MOPAC2016.exe
babel -imopout az_opt.out -ipdb az_opt.pdb
~~~
The last comman…
-
Accomodation for “do not resuscitate” or “do not intubate” status for patients is required for N3C. Hopkins [preprint manuscript](https://www.medrxiv.org/content/10.1101/2020.05.24.20111864v1) cites …
-
We are using the most recent vocabulary (v5.0 15-DEC-17) to populate our OMOP instance, and we noticed drug concept ids that are in our dataset that are do not map to a standard concept id. I've atta…
-
We utilize semantic understanding to interpret meanings of concepts and subsequently determine 'standard' vs. 'non-standard' classifications, along with mapping. This approach is generally effective, …
-
Hi, I just noticed that diagnosis was was not extracted and transformed to CONDITION_OCCURRENCE table. Since diagnosis are very important in many pipelines, do you have plans to also support this?
…
-
This may be a bit too specific to our use case, but declaring the base model could help to infer some things. For example, the PEDSnet data model is based on OMOP so we could rely on that for implicit…
bruth updated
9 years ago
-
Suggested/Brought up by @weiguUL
- [ ] why it matters https://www.ga4gh.org/news/phenopackets-standardizing-and-exchanging-patient-phenotypic-data/
- [ ] introduce the Phenopacket specification: …
-
TYPE | MEASUREMENT
-- | --
ITEM | Result of Culture and Microbiology Susceptibility
FORUM POST | http://forums.ohdsi.org/t/mapping-microbiology-susceptibility-into-omop-cdm4-observations/167
SOLUT…
-
OMOP has some interesting stuff here https://www.ohdsi.org/methods-library/
I don't think it will work with i2b2, but at a higher level they might have solved some problems in a manner that is transf…
bokov updated
6 years ago