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**Describe the bug**
When using a loom file as input, if the loom file has been generated from ScopeLoomR the pipeline crashes.
**To Reproduce**
Steps to reproduce the behavior:
1. Configure wit…
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https://mp.weixin.qq.com/s/i0Gv4h2b4goVzRSRJmkadw
ixxmu updated
3 years ago
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Hi. It looks like I am running into issues with DNA motif analysis and specifically when I use the function add motifs(). I would really appreciate some feedback or help on this issue. Thank you f…
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Hello, msbentsen,
I have some questions when using **TOBIAS** for my ATAC-seq data analysis, I read the docs on TOBIAS Github, but still confused.
My atac-seq analysis propose is finding different T…
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I'm new to this tool. I tried running it on Mac. I had below the parameters:
```
sra: [SRR629563] # paired-end SRAs, comma separated, can leave empty, e.g. SRR629563
fq: [] # paired-end fastq p…
llniu updated
3 years ago
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Figure out what the inputs are for isopret.
1. Data
-- Suggestion would be that we expect all isoform level data to go through HBA-DEALS. We thus expect the output of HBA-DEALS to be the input for…
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Dear Jesper,
I am struggling to use the IMAGE method to process data from my lab. I am getting the error below:
```
Error in UseMethod("predict") :
no applicable method for 'predict' applie…
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Before we start updating DRAO, we need to update the member ontologies and ensure there are no resulting conflicts. This ticket covers that update.
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I have been successful integrating 3 ATACseq samples using your vignettes and other posts on github.
However, using the final integrated object I get an error when using coverageplot(integrated)
Thi…
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https://mp.weixin.qq.com/s/zt-5JshP71ZX3OwPOsfagA
ixxmu updated
3 years ago