-
Probably has something to do with the fact, that we parse the inputs from a file here.
Which get directly loaded into input "path"s to processes. And the paths are potentially even URIs.
I don't kno…
-
Some information that can help the annotation.
- https://massive.ucsd.edu/ProteoSAFe/result.jsp?task=c8f8d31b313e44e682f7732a0b231726&view=display_metadata_results&file=f.RMSV000000298%2F2020-03-1…
-
We need to update the CI/CD in order to be able to validate PRs that contains sdrf changes or additions.
A prototype of the CI/CD has been built in CircleCI but is not working properly. Related is…
-
I see `Material Type` in many annotations but it is not specified anywhere in the standard description. Is it allowed, and if yes, why is it needed?
Material type sounds like a sample characteristi…
-
https://github.com/bigbio/proteomics-metadata-standard/blob/f183deb3bb224852e6b8e35fcb9a70cfb7757244/annotated-projects/PXD004683/sdrf.tsv
This experiment is wrong. In TMT experiment each sample sh…
-
Hi all:
We have discussed before in other topics this issue #267, #218 but never as the central point of the discussion. I have presented today the format to HUPO-PSI, and one suggestion is to mak…
-
I think we should give an example of how fractions of the same biological sample are grouped.
Ideally in the context of multiplexed data as this is kind of the most complex example.
Also MSstats e.g…
-
@julianus @timosachsenberg :
When running the id part only, I guess the proteomicslfq node should only report the protein inference and not the quant part. Currently, I have an error like for this…
-
When querying with a non-chacrateristics not-comment like `source`, the server fails.
-
How should a mixed sample be reflected in the annotation? For example, there is a separate analysis of different individuals and all pooled together or just a commercial plasma sample from lots of dif…