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There are two ways to look at variation inside SVs
* Run the calling in something like `--recall` mode, but turn on graph augmentation. Then compare the insertion sequences that are called back to t…
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when I run python variation_bbs_with_target_graph_segments_suppl.py , I got error.
$ python variation_bbs_with_target_graph_segments_suppl.py
Namespace(batch_size=1, channels=1, exp_folder='exp',…
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In Noa's paper "The effect of individual variation on the structure and function of interaction networks in harvester ants", she had only one network. She inferred individual variation in degree from …
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There are variations by Schrijver and Szegedy of Lovasz theta which are computable using SDP, just as the one from #18830.
An implementation calling the standard in Sage SDP solver from `cvxopt` i…
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I am working on a graph-based pan-genome construction for ten genomes from the same crop whose genome size is less than 500 Mb. When following the Minigraph-Cactus Pangenome Pipeline to construct the …
Sunhh updated
2 years ago
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**Description**
Code Embeddings are abstract representations of source code employed in multiple automation tasks in software engineering like clone detection, traceability, or code generation. This …
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**1. What were you trying to do?**
Get (and understand!) a packed coverage table from an alignment generated with GraphAligner against my variation graph.
I have a set of reads from a locus aligne…
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Hello!
This is actually a pretty standard feature of most windows-programs, including Revit, PDF Editors, Grasshopper, etc.
Because I love a tidy graph, I am constantly aligned things and even t…
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Hello,
I encountered two issues while using your method. The first issue is related to the marson_grn_128.pth file. When running your code, this file is used. If we want to use our own dataset, how…
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This is a tracking bug to add screencasts to the docs.
A brief draft of the content we want to cover with the screencasts, these are not sorted by priority at this moment - please contribute to th…