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Approximately 1.5 weeks ago, I got a `varscan` plot that looked like this:
I don…
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Greetings,
Seeking you assistance in this issue that I'm facing:
I'm having bcbio break on all my samples because the application is trying to add bool and list.
This appears to happen after hl…
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Racket: version 7.5.0.8--2019-12-04(-/f) [cs]
git sha1 id: 22387af060f7a2624cb140b90831ed5d27cac6e9
OS: Xubuntu 19.10
gcc: version 9.2.1 20191008 (Ubuntu 9.2.1-9ubuntu2) Target: x86_64-linux-gnu
p…
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Hi,
Is it possible to update somaticseq on anaconda? current version there is 2.8.1
https://anaconda.org/bioconda/somaticseq
Thanks!
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I'm trying to install the latest stable version and it's failing, something to do with a badly formatted YAML file. Here's what I'm running:
```
bcbio_path=/export/home/ncit/external/a.mizeranschi…
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bcbio version 1.1.4a . see below from the job; failed about 18 hours in, exomeseq run on 36-core 200GB machine. Seemingly it is trying to reference a directory that is not there..?
Greatly appre…
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MuTect and VarScan has a threshold setting (`--tumor_f_pretest`) to select sites with at least a certain fraction of non-REF alleles. Something similar is in VarScan (minimum frequency to call an alle…
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Hi!
I had a quick question about setting runtime on my initial run of the pipeline. I am trying to run on two normals plus 6 tumor samples. From my reading of the tutorial - it should take 24 hours…
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Hi, I have installed lyve-SET-1.1.4f and I have run make env to set the perl and perl5lib environoment and no errors returns with "make check"
However, when I run lyve-SET on my fastq data, it retu…