-
As a thought exercise (I'm not suggesting we actually implement these suggestions at this time), how might Disq be extended to provide distributed `RDD`s for models from libraries other than htsjdk?
…
-
I downloaded the source code using the link from [Pypi](https://github.com/mhammell-laboratory/bamqc/archive/0.6.4.tar.gz), and tried to install using the instructions in [doc/INSTALL](https://github.…
-
When defining an input file with a validator for sequence input files the following way:
```
parser.add_option(options.queryFile, 'q', "query", "Query sequences.",
seqan3::option_spec::REQUIRED,
…
-
Hi.
Is it possible to read (b)gzipped files?
Nelson
-
the plugin runs single-ended sequences that are of type 'SampleData[SequencesWithQuality]' fine but when I import the same sequences with the same manifest using the data type 'SampleData[JoinedSequ…
-
Hi, I am using modbamtools to view methylation of a region of interest and ran the following command:
```
modbamtools plot \
-r :- \
-b .bed \
-o \
.bam
```
And received t…
-
Hello, I was following the installation instruction but couldn't solve the following error:
make
Building BEDTools:
=========================================================
CXXFLAGS is [-g -Wall …
-
Hello,
I have 2 pooled snATAC donors and their individual bulk RNA-seq data. To demultiplex, my strategy was to call common variant SNPs for the two individuals separately using CellSNP, followed b…
-
I'm trying to follow the example in `samtools_encode_fastq.sh` to test out converting FASTQ to CRAM, but I'm getting the error indicated above. Not sure if this is even worth doing, based on my under…
-
Hi, Cargo is installed and added to path however, on building the `k-mer_distinguishing` tool with `cargo build --release` the package `rust-htslib v0.22.0` fails to build resulting in a error out `e…