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rrazaghi
/
modbamtools
Set of tools to manipulate and visualize modified base bam files
Apache License 2.0
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Only plot command working
#40
skranz0
opened
9 months ago
0
Installation issue /modbamtools
#39
Jordi0102
opened
10 months ago
1
KeyError: 'gene_id'
#38
partha434
opened
1 year ago
1
modbamtools plot command will append on more output if the same prefix is used
#37
pwh124
opened
1 year ago
0
PDF output no longer works
#36
pwh124
opened
1 year ago
0
Heterogeneity calculation does not work without a GTF file
#35
pwh124
opened
1 year ago
5
No clustering if a GTF isn't also used as an input
#34
pwh124
opened
1 year ago
0
Add unphased BAM to example files for testing purposes
#33
pwh124
opened
1 year ago
0
BAM haplotyping requirement
#32
pwh124
opened
1 year ago
0
Installation issues
#31
pwh124
opened
1 year ago
0
How to color samples of the same group with the same color?
#30
kaanokay
opened
1 year ago
0
Issues with using the modbamtools plot
#29
olaraym
opened
1 year ago
0
ValueError: If mode is 'interp', window_length must be less than or equal to the size of x.
#28
rl4940
opened
1 year ago
2
Clustering failure produces error message
#27
rowanhowellGE
opened
1 year ago
0
ValueError: If mode is 'interp', window_length must be less than or equal to the size of x.
#26
rainwala
closed
1 year ago
1
mod bam with both 5mC and 5hmC?
#25
gwonshin
opened
1 year ago
0
Plotting a BED file - parse_bed_rectangle_gl function
#24
steven-solar
opened
1 year ago
2
IndexError: list index out of range
#23
yykaya
opened
1 year ago
2
How to use modbamtools cluster for multiple modbams?
#22
PanZiwei
opened
1 year ago
0
calcmeth sample size concern
#21
Yijun-Tian
opened
1 year ago
0
parse_bed_rectangle_gl function is missing
#20
Priyesh000
opened
1 year ago
1
How to sort Grch37 gtf file ?
#19
xiucz
closed
1 year ago
1
Correct format for plotting multiple bams
#18
690645258
closed
1 year ago
3
Installing modbamtools/0.4.8 on python/3.10 lacking package of libmodbampy
#17
qiyubio
opened
2 years ago
7
automatically adjust spacing and marker size in single reads
#16
rrazaghi
opened
2 years ago
0
expand methylation smoothing methods
#15
rrazaghi
opened
2 years ago
0
ValueError: If mode is 'interp', window_length must be less than or equal to the size of x.
#14
biorococo
closed
2 years ago
5
add cluster assignment as a bam tag to output
#13
rrazaghi
opened
2 years ago
0
Installation on ubuntu 20.04
#12
colindaven
opened
2 years ago
1
3+ haplotypes?
#11
colindaven
closed
2 years ago
4
error loading taidx file
#10
DiegoZavallo
closed
2 years ago
3
error running modbamtools
#9
DiegoZavallo
closed
2 years ago
8
add WebGL support for html outputs
#8
rrazaghi
closed
2 years ago
1
add min sample size option to clustering command
#7
rrazaghi
opened
2 years ago
0
add --color to plot
#6
rrazaghi
opened
2 years ago
0
update pytest
#5
rrazaghi
opened
2 years ago
0
add documentation for heterogeneity module
#4
rrazaghi
opened
2 years ago
0
Python 3.9 3.10 support
#3
rrazaghi
closed
2 years ago
1
Add font scale
#2
rrazaghi
closed
2 years ago
1
legend missing in graph
#1
sabiqali
closed
2 years ago
3