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Hi,
I know we need a hard filter to variant and invariant data, respectively, which means we may lose sites within each sliding window, for example, for 50k window size, after filtering out the …
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Thanks for providing an excellent scenic pipeline for custom species! and I have a question: how to generate the global.hmm file or how to fetch this file(i have tried lfs but failed) .Looking forwar…
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Cloning the following repository leads to issues in the `Repository` perspective:
- https://github.com/quanterall/bioinfo
It seems that the issue is due to the following files/folders which co…
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python 2.7.6
OS: linux
Linking 计算机算法设计与分析15-16秋季_资源
http://course.ucas.ac.cn/access/content/group/117006/http:__bioinfo.ict.ac.cn_~dbu_AlgorithmCourses_CS711008Z_CS711008Z_2015.html
http://course.uc…
leido updated
9 years ago
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```
wget ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/254/395/GCF_003254395.2_Amel_HAv3.1/GCF_003254395.2_Amel_HAv3.1_genomic.fna.gz
wget ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/254/395/G…
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Sorry,
This is not a problem with your code rather my question
You have called structural variants with Crest and Delly and I called with Manta, how did you annotated the output of Crest or Del…
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## Input specifications
To skip the qc and assembly step we can provide the assemblies and reads used to generate the assemblies in a CSV file together with a CSV file specifying the reads.
The asse…
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Hi,
the structure of the http://apprisws.bioinfo.cnio.es/download/data/ has changed:
Under ./species_full folder there are other subfolders based on the annotation:
ens76.v8.16Apr2015/ 2015-06-11 12:…
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```
rm libQt*
rm libcu*
rm libopencv*
rm libmwdiagram
```
Docker Image의 구조가 layer를 쌓는거라 삭제한것이 기록만 남고 실제로 용량을 줄이지 않는다.
https://github.com/jwilder/docker-squash
kooBH updated
3 years ago
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Hi @tseemann
When I update my snippy to 4.6.0, I got 0 varaint after runing. snps.csv contain nothing. Please see my snps.log below
Your response is greatly apriciate !
### echo snippy 4.6.0
##…