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As one can see for the following Item, Senior Theses Items imported from submissions for certificate programs are members of multiple collections, one being the departmental collection, the other bein…
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Aim: improve the maintainability of the project catalogue, allowing it to grow without causing an increasing amount of development overhead. Currently, it is populated via a manually run script that c…
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The following is drawn from the documentation. Should it succeed? Or should there be intervening code that creates the right sequence for the target_gene?
```
>>> from sbol2 import *
RDFLib Versi…
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The abundance_threshold and alignment_score_threshold filter doesn't work. I'm not sure why.
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It would be useful to have a table (or list) with all the datasets, a short description and their dimensions.
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## Issue
There are two issues. First, feature barcode syntax. Second, combining VDJ workflow with new scRNAExpression-CellRangerFastq workflow.
### Feature Barcode
Currently, FONDA uses 'old' cel…
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Hi,
Thanks so much for making this code available and usable!
In your NG manuscript, you look at some different options for using H3K27ac HiChIP, as well as including quantitative DHS signal. …
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Many diagrams in practice include "interactions with interactions." This SEP establishes the circumstances in which such a form is allowed.
https://github.com/SynBioDex/SBOL-visual/blob/master/SEPs…
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I'd like to propose a glyph for type IIs restriction endonuclease sites, a feature used in diagrams of Golden Gate assembly and especially in MoClo-like hierarchical DNA assembly part/cassette/multige…
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Hi,
I'm analyzing some single-cell RNA-seq data from a pooled CRISPR-screen. Using the known target genes of well understood CRISPR interference perturbations we compared different DE methods, and …