RGLab MAST issues - Githubissues

RGLab / MAST

Tools and methods for analysis of single cell assay data in R

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Can NOT install MAST

#189 nhu-github closed 2 months ago
0
DEG counts are associated with the number of cells

#188 ZunpengLiu opened 3 months ago
0
Error: grouping factors must have > 1 sampled level

#187 andrewsong777 opened 5 months ago
0
Got error when using summary(zlmCond.glmer)

#186 fnhe closed 6 months ago
1
Segfaults

#185 mspivakov closed 6 months ago
3
Error in getClassDef(x@superClass, package = packageSlot(x))@virtual : no applicable method for `@` applied to an object of class "NULL"

#184 nfancy opened 7 months ago
10
Repackaging #182

#183 amcdavid closed 10 months ago
0
transpose contrast0 if provided as class Hypothesis

#182 derrik-gratz closed 10 months ago
1
getLogFC cannot accept hypothesis as contrast0 due to internal transpose

#181 derrik-gratz closed 10 months ago
0
Error in validObject(.Object): invalid class “corMatrix” object: 'sd' slot has nonfinite elements

#180 derrik-gratz opened 11 months ago
7
"R CMD check" failure on Linux ARM64

#179 martin-g closed 1 year ago
6
lrTest's with CoefficientHypothesis and contrast matrix give inconsistent results

#178 ImNotaGit opened 1 year ago
0
p values not reported for all features

#177 susheelbhanu opened 1 year ago
0
FindAllMarkers issue

#176 andrew2k closed 1 year ago
1
bug: MAST returns error after Seurat SCTransform, v2 regularization

#175 grhogg closed 1 year ago
10
Error: invalid name for slot of class “BayesGLMlike”: logfc.tLReshold

#174 avpatel18 closed 1 year ago
2
Low logFCs and failure to converge?

#173 learning-MD opened 2 years ago
0
Missing figures from pkgdown maitanalysis vignette

#172 alanocallaghan closed 2 years ago
2
Support for passing hypothesis to doLRT in summary() as in lrTest()

#171 ImNotaGit opened 2 years ago
6
MAST v.1.21.3 -- Error: $ operator is invalid for atomic vectors

#170 akhst7 closed 2 years ago
7
Parallelization for summary() with doLRT; Passing a design matrix to zlm()

#169 ImNotaGit closed 2 years ago
1
What should I do with the "NaN" values, with extremely small `Pr(>Chisq)` in the `coef` column of the `summary(zlmCond)` result?

#168 danli349 opened 2 years ago
0
LFC interpretation

#167 rajewski closed 2 years ago
1
Applicability of MAST to spatial transcriptomics analyses without single-cell resolution

#166 jeremycfd opened 3 years ago
0
When I run `zlm` with several clusters, how to compare 1 cluster versus all the others?

#165 danli349 closed 3 years ago
1
time course DE analysis

#164 shokohirosue closed 3 years ago
1
Multiple variables, single coefficient

#163 kanefos closed 3 years ago
2
What are the meanings of the components "CDHS" in the "zlm" function?

#162 danli349 closed 2 years ago
3
Comparisons among three conditions

#161 sofiapuvogel closed 3 years ago
1
p value = 0

#160 shokohirosue closed 3 years ago
2
GSEA background sets of genes

#159 sofiapuvogel closed 3 years ago
2
Selecting count data in zlm function

#158 IrSoler closed 3 years ago
9
Restricted Maximum Likelihood or Maximum Likelihood for estimating parameters in mixed effect model using MAST?

#157 sofiapuvogelvittini closed 2 years ago
3
Segmentation fault

#156 Santos22903 closed 3 years ago
1
Deviance

#155 sofiapuvogelvittini opened 3 years ago
2
gseaAfterBoot enriched genes

#154 EBosi opened 3 years ago
5
Understanding zlm with Batch effects for Differential Expression Analysis

#153 jtlandis closed 3 years ago
1
MAST uses all cores even after setting mc.cores

#152 fbnrst closed 3 years ago
5
Convergence issues due to all cells in comparison expressed certain genes?

#151 hoholee opened 3 years ago
2
Update README.md to reflect removal of 'MAST-intro' vignette

#150 compbiolover closed 3 years ago
0
Changes to Matrix::rankMatrix break tests

#149 amcdavid closed 3 years ago
2
Problems when fitting a linear-mixed model ('glmer') with sc-RNAseq data

#148 aidarripoll opened 3 years ago
4
How to calculate logFC for condition in a mixed effects model with MAST?

#147 esrasefik closed 2 years ago
15
Error: grouping factors must have > 1 sampled level

#146 esrasefik opened 3 years ago
4
Error in zlm

#145 Samantha-Czn closed 3 years ago
7
Discrepancy between including factors as covariates directly vs hard-coding dummy variables

#144 jmchan88 opened 3 years ago
5
warning messages: In rbind(...) : number of columns of result is not a multiple of vector length

#143 wangjingshen closed 3 years ago
9
Unexpected Large Confidence Interval of LogFC

#142 JiaxinLi-lipluszn opened 3 years ago
2
Unable to calculate log-ratio test for interaction term

#141 jmchan88 closed 3 years ago
5
Units of logFC for a numeric dependent variable

#140 combiz closed 4 years ago
5