RGLab MAST issues - Githubissues

RGLab / MAST

Tools and methods for analysis of single cell assay data in R

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DE between different groups : post-hoc tests?

#139 fabien-tell opened 4 years ago
3
Resource requirements for large sparse matrices

#138 combiz closed 3 years ago
6
P-value vs. log fold change discrepancies when fitting a model with a covariate

#137 argschwind closed 4 years ago
2
Specify the number of cores for parallel computing

#136 WT215 closed 4 years ago
1
NaN in coefficient when using model with several covariates (but FDR < 1)

#135 fbrundu closed 4 years ago
9
Importing CellRanger read count matrix or Seurat object into MAST

#134 singcell closed 4 years ago
3
Warnings/errors produced while running MAST with mixed effect

#133 jmchan88 closed 4 years ago
16
Request for an explanation about the summary function output

#132 VicenteFR closed 4 years ago
1
bootVcov1 gives an error due to differences in the dimension of the bootstraps

#131 jaquol opened 4 years ago
6
Speed up fitting process when including random effect with `lme4`?

#130 hoholee opened 4 years ago
5
return to dependence on ARM 1.10.1

#129 gfinak opened 4 years ago
1
Possible Issue with Average Correlation Value from gseaAfterBoot

#128 edvanburen closed 4 years ago
3
Nameless Gene column

#127 drmofjv closed 4 years ago
3
Creating a package that depends on glmer in MAST

#126 kdzimm closed 4 years ago
14
deviance_residuals_hook/bayesglm.influence breaks in R 4.0

#125 amcdavid closed 4 years ago
0
About obtaining DE genes

#124 ahmedabbas81 closed 4 years ago
3
comparing 2 models with confounders

#123 massonix closed 4 years ago
1
Prefix melt with reshape2::

#122 combiz closed 4 years ago
2
invalid name for slot of class "BayesGLMLike"

#121 cstill1992 closed 3 years ago
9
FDR too small

#120 jphe closed 4 years ago
1
Error in slot(value, what) : no slot of name "reducedDims"

#119 mimi3421 closed 4 years ago
5
DE among experimental and control group

#118 chendianyu closed 4 years ago
1
Minimum number of cells required for the MAST

#117 zhaocheng3326 closed 5 years ago
2
Travis builds always timeout

#116 amcdavid closed 5 years ago
3
Error with sparse matrices

#115 ryandhindsa closed 5 years ago
7
zlm error: Error in parse(text = x, keep.source = FALSE) : <text>:2:0: unexpected end of input

#114 hellocita closed 5 years ago
4
Error in parse(text = x, keep.source = FALSE) : <text>:2:0: unexpected end of input

#113 Wenjuan-ZHU closed 5 years ago
6
Log Basis of getlogFC()

#112 le-ander closed 5 years ago
1
Problem with the mast_filter

#111 pandhey closed 5 years ago
2
Working weights are not updated properly in bayesglm.R

#110 NikTuzov opened 5 years ago
25
no H cmponenet after running the "zlm" function

#109 kristinazuza opened 5 years ago
3
Error with se.coef

#108 vincent6liu closed 5 years ago
3
Random effects

#107 livnatje closed 5 years ago
1
DE among any two clusters

#106 AndMass closed 3 years ago
5
Is it possible to use different covariates for the continuous and discrete models?

#105 daniel-conn17 closed 5 years ago
2
minor typos

#104 seaaan closed 5 years ago
1
Can I use SparseMatrix or HDF5Array

#103 swbioinf closed 5 years ago
5
python implementation of MAST

#102 DanSchnell closed 5 years ago
3
issues of multi-conditions

#101 jsxlei closed 5 years ago
5
Base of logarithm for fold change

#100 khandarius closed 5 years ago
3
Correcting README typo

#99 dburkhardt closed 6 years ago
0
MAST unable to estimate components when including mixed effect

#98 gabprg opened 6 years ago
9
Nested batch effects in MAST

#97 LuckyMD opened 6 years ago
14
Using model-based variance estimates instead of bootstraps

#96 dmoaks closed 6 years ago
2
fix typo in scetosinglecellassay

#95 gfinak closed 6 years ago
0
fix typo in SceToSingleCellAssay

#94 gfinak closed 6 years ago
0
fix typo in function name in tests

#93 gfinak closed 6 years ago
0
primerid is converted to integer for Hurdle component when summarising ZlmFit object

#92 uhlitz closed 6 years ago
5
zlm() still depends on SingleCellAssay

#91 uhlitz closed 6 years ago
6
No significant DE genes after MAST (FDR < 0.05)

#90 fbrundu opened 6 years ago
7

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