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RGLab
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MAST
Tools and methods for analysis of single cell assay data in R
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DE between different groups : post-hoc tests?
#139
fabien-tell
opened
4 years ago
3
Resource requirements for large sparse matrices
#138
combiz
closed
3 years ago
6
P-value vs. log fold change discrepancies when fitting a model with a covariate
#137
argschwind
closed
4 years ago
2
Specify the number of cores for parallel computing
#136
WT215
closed
4 years ago
1
NaN in coefficient when using model with several covariates (but FDR < 1)
#135
fbrundu
closed
4 years ago
9
Importing CellRanger read count matrix or Seurat object into MAST
#134
singcell
closed
4 years ago
3
Warnings/errors produced while running MAST with mixed effect
#133
jmchan88
closed
4 years ago
16
Request for an explanation about the summary function output
#132
VicenteFR
closed
4 years ago
1
bootVcov1 gives an error due to differences in the dimension of the bootstraps
#131
jaquol
opened
4 years ago
6
Speed up fitting process when including random effect with `lme4`?
#130
hoholee
opened
4 years ago
5
return to dependence on ARM 1.10.1
#129
gfinak
opened
4 years ago
1
Possible Issue with Average Correlation Value from gseaAfterBoot
#128
edvanburen
closed
4 years ago
3
Nameless Gene column
#127
drmofjv
closed
4 years ago
3
Creating a package that depends on glmer in MAST
#126
kdzimm
closed
4 years ago
14
deviance_residuals_hook/bayesglm.influence breaks in R 4.0
#125
amcdavid
closed
4 years ago
0
About obtaining DE genes
#124
ahmedabbas81
closed
4 years ago
3
comparing 2 models with confounders
#123
massonix
closed
4 years ago
1
Prefix melt with reshape2::
#122
combiz
closed
4 years ago
2
invalid name for slot of class "BayesGLMLike"
#121
cstill1992
closed
3 years ago
9
FDR too small
#120
jphe
closed
4 years ago
1
Error in slot(value, what) : no slot of name "reducedDims"
#119
mimi3421
closed
4 years ago
5
DE among experimental and control group
#118
chendianyu
closed
4 years ago
1
Minimum number of cells required for the MAST
#117
zhaocheng3326
closed
5 years ago
2
Travis builds always timeout
#116
amcdavid
closed
5 years ago
3
Error with sparse matrices
#115
ryandhindsa
closed
5 years ago
7
zlm error: Error in parse(text = x, keep.source = FALSE) : <text>:2:0: unexpected end of input
#114
hellocita
closed
5 years ago
4
Error in parse(text = x, keep.source = FALSE) : <text>:2:0: unexpected end of input
#113
Wenjuan-ZHU
closed
5 years ago
6
Log Basis of getlogFC()
#112
le-ander
closed
5 years ago
1
Problem with the mast_filter
#111
pandhey
closed
5 years ago
2
Working weights are not updated properly in bayesglm.R
#110
NikTuzov
opened
5 years ago
25
no H cmponenet after running the "zlm" function
#109
kristinazuza
opened
5 years ago
3
Error with se.coef
#108
vincent6liu
closed
5 years ago
3
Random effects
#107
livnatje
closed
5 years ago
1
DE among any two clusters
#106
AndMass
closed
3 years ago
5
Is it possible to use different covariates for the continuous and discrete models?
#105
daniel-conn17
closed
5 years ago
2
minor typos
#104
seaaan
closed
5 years ago
1
Can I use SparseMatrix or HDF5Array
#103
swbioinf
closed
5 years ago
5
python implementation of MAST
#102
DanSchnell
closed
5 years ago
3
issues of multi-conditions
#101
jsxlei
closed
5 years ago
5
Base of logarithm for fold change
#100
khandarius
closed
5 years ago
3
Correcting README typo
#99
dburkhardt
closed
6 years ago
0
MAST unable to estimate components when including mixed effect
#98
gabprg
opened
6 years ago
9
Nested batch effects in MAST
#97
LuckyMD
opened
6 years ago
14
Using model-based variance estimates instead of bootstraps
#96
dmoaks
closed
6 years ago
2
fix typo in scetosinglecellassay
#95
gfinak
closed
6 years ago
0
fix typo in SceToSingleCellAssay
#94
gfinak
closed
6 years ago
0
fix typo in function name in tests
#93
gfinak
closed
6 years ago
0
primerid is converted to integer for Hurdle component when summarising ZlmFit object
#92
uhlitz
closed
6 years ago
5
zlm() still depends on SingleCellAssay
#91
uhlitz
closed
6 years ago
6
No significant DE genes after MAST (FDR < 0.05)
#90
fbrundu
opened
6 years ago
7
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