-
Fix synonym to be DNase-Seq to DNase-seq
Reported by: vsmalladi
Original Ticket: [obi/obi-terms/693](https://sourceforge.net/p/obi/obi-terms/693)
-
Hello,
I am attempting to run your ATAC-Seq pipeline, just on some sample ENCODE data at the moment (thank you for sharing it!). I'm consistently running into an error at the IDR step that I'm not s…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/wzthu/esATAC
Confirm the following by editing eac…
wzthu updated
6 years ago
-
Hi kundajelab,
Thanks again for providing and updating the pipeline. I'm using the following version:
Latest git commit: 3f3eeefd9763a1e00ac81a2244cf17adac5c64a4 (Sun Feb 26 14:12:05 2017)
an…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/jianhong/ATACseqQC
Confirm the following by editi…
-
Hello,
Thanks for LOLA! It looks like a great resource.
I get this error when trying to load the latest LOLAExt cached database:
``` r
> regionDB2
-
Hi!
I am trying to run the pipeline and keep getting this error. I have tried:
export PYTHON_EGG_CACHE="/home/jet456/Pipeline/pythoneggcache"
chmod -R 777 /home/jet456/Pipeline/pythoneggcache
…
-
Fatal error: TF_chipseq_pipeline/modules/align_bwa.bds, line 87, pos 3. Task/s failed.
chipseq.bds, line 76 : main()
chipseq.bds, line 79 : void main() { // chipseq pipeline starts here
chipseq.bds…
rdali updated
7 years ago
-
Is there a way to tell it to just pick one? Thanks!
Error (modules/align_bowtie2.bds, line 36, pos 3): Bowtie2 index (-bwt2_idx) doesn't exists! (file: /share/PI/akundaje/data/hg19/bwt2_idx/ENCODEH…
-
Hi,
I think it's better to open a new discussion.
I have bedgraph files from Dnase-I sequecing.
I searched online how to conver bedgraph file to bed file.
It showed that bedgraph files are bed fi…