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nsheff
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LOLA
Locus Overlap Analysis: Enrichment of Genomic Ranges
http://code.databio.org/LOLA
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Database download from "latest databases" doesnt work - 403 Forbidden Error
#47
sreichl
closed
4 weeks ago
3
Error when trying to load a regionDB
#46
HanneHjorthaug
opened
1 year ago
0
Fisher test - two sided hypothesis
#45
JBinkowski
opened
1 year ago
0
Error by using extractEnrichmentOverlap function
#44
thwagner0815
closed
1 year ago
0
P4 tool not grouping according to the paper!!
#43
09Raghu09
opened
1 year ago
0
LOLA runLOLA-regionDB to use for tissue-specific TFBS
#42
shanie-landen
opened
3 years ago
0
R package error
#41
yangyongsan-bio
opened
3 years ago
4
Each of the 2 combined objects has sequence levels not in the other:
#40
storytc
closed
3 years ago
4
question: how to test two region sets for differential enrichment with buildRestrictedUniverse?
#39
AdrijaK
opened
3 years ago
2
Error if GRangesList has names
#38
j-lawson
opened
4 years ago
2
iGD integration
#37
joseverdezoto
opened
4 years ago
0
testing for enrichment of significant individual cpgs
#36
lxw391
opened
4 years ago
2
PEP loading function for LOLA
#35
joseverdezoto
opened
4 years ago
4
PEP tag system
#34
nsheff
opened
4 years ago
0
Can't load an example regionDB.
#33
lining-yuan
opened
4 years ago
3
PEP file read caching
#32
nsheff
opened
4 years ago
2
runLOLA results table for PEP databases
#31
joseverdezoto
opened
4 years ago
0
Fix typo, add link to other vignette
#30
j-lawson
closed
5 years ago
0
cistrome_mm10
#29
byerscan
opened
5 years ago
2
Inclusion of mm10 JASAPR prediction track into LOLA JASPAR
#28
holgerbrandl
opened
5 years ago
3
Different results between LOLAweb interactive server and local R package
#27
NyxSLY
opened
6 years ago
7
Re-order result columns
#26
nsheff
opened
6 years ago
0
Add in missing cellType/antibody entries for encodeTFBSmm10
#25
oneillkza
closed
6 years ago
6
hg38 database
#24
sb5169
closed
6 years ago
1
OddsRatio or logOddsRatio ?
#23
gouthamatla
closed
6 years ago
2
The readBed function does not transform from 0-based to 1-based coordinates
#22
deyanyosifov
closed
6 years ago
4
specify data.table's melt
#21
nsheff
closed
6 years ago
0
two-sided fisher test
#20
bmreilly
closed
6 years ago
1
readBed Input Format
#19
imk1
closed
6 years ago
3
Merging database region-sets
#18
flopflip
opened
7 years ago
2
Error in setnames(scoreTable, c("Var1", "Var2", "value"), c("userSet", : Items of 'old' not found in column names: Var1,Var2
#17
dingailuma
closed
7 years ago
3
Make refreshSizes an option in readRegionSetAnnotation
#16
JonBarenboim
closed
6 years ago
1
0-based bed files in database are not properly translated to 1-based regions for LOLA
#15
ktrns
closed
7 years ago
8
readBed is not consistent with import.bed
#14
wcstcyx
closed
7 years ago
1
Combining LOLA Core and Extended
#13
rajitz
closed
7 years ago
1
Histone marks collections
#12
enricoferrero
opened
8 years ago
0
Negative c entry in table. Bug with userSetsLength; this should not happen.
#11
enricoferrero
opened
8 years ago
9
Can't load LOLAExt with loadRegionDB()
#10
enricoferrero
closed
7 years ago
4
Add a Gitter chat badge to README.md
#9
gitter-badger
closed
7 years ago
0
Command line interface
#8
ghost
opened
9 years ago
0
No error on bad regionDB
#7
nsheff
closed
9 years ago
0
Clarifications
#6
fhalbritter
closed
9 years ago
3
Column naming
#5
fhalbritter
closed
9 years ago
3
gettingStarted.Rmd
#4
fhalbritter
closed
8 years ago
2
clarify checkUniverseAppropriateness
#3
nsheff
opened
9 years ago
0
simpleCache dependency
#2
nsheff
closed
9 years ago
0
reading zipped bed files
#1
nsheff
opened
9 years ago
1