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Hello cool people,
I recently found out that compartments calling doesn't seem to behave normally (one of our user too: https://github.com/deeptools/HiCExplorer/issues/437). I used matrices coming …
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Hello,
I am attempting to run MultiQC on output files generated by a slam-seq analysis tool called slamdunk.
MultiQC seems to run fine on the output produced from one of the slamdunk tools but n…
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Hi,
Thank you for the cool tools. I am trying out the tools to analyze hic matrix but also new to computers..
I recently ran into a problem where .cool file converted from .h5 (hicexplorer) having 0…
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Hi, I find the RdYlBu_r colormap is better to view Hi-C ICE data in hicexplorer. But in higlass, there is only jet colormap may close to RdYlBu_r.
Is it possible to add more color code or at least R…
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Dear pyGenomeTracks providers,
is there the option to overlay Hi-C maps and normalise - enlightening differential activity(interaction) between Hi-C Maps?
Many thanks!
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Hi
I am having an issue when runing the hicCorrectMatrix tool. If you could give me some advice/solutions, that would be great. I am running the tool on a computer cluster from my lab.
- [ x] Past…
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_Commit_: NA
#### Steps to reproduce
1. Generating mcool with cooler zoomify and balancing matrix with cooler balance and hicexplorer's hicCorrectMatrix KR implementation and saving the respective…
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Hi I met one error with the latest hicplotTAD. Do you have any idea about this?
Thanks
Shuangyang
(base) [shuangyang.wu@clip-login-0 merged]$ hicPlotTADs --tracks conf --region 1:100000-500…
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Hi. I am using tadbit tools. I have tried to export the results of an analysis to a cooler file with both tadbit bin and tadbit export. However, when I try to inspect the file with either the [cooler …
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Hello, whenever im running hicHyperOptDetectLoops, i am getting weird usage errors. But the errors for missing requirements dont show up if you just look at the usage. So it seems like there are diffe…