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open2c
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cooltools
The tools for your .cool's
MIT License
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Control/Observed whole genome.
#537
rkash
opened
2 days ago
0
Performance of obs/exp pileups is significantly lower than of obs pileups with nproc > 1
#536
dmitrymyl
opened
2 weeks ago
0
Pool decorator doesn't allow 3rd party multiprocessing map functors
#535
dmitrymyl
opened
2 weeks ago
0
make register_cmap backward compatible wrt to argument order
#534
golobor
closed
1 month ago
0
an attempt to fix register_cmap import in plotting
#533
golobor
closed
1 month ago
3
fix a major bug in cross score
#532
golobor
closed
1 month ago
0
reduce the chunksize in rearrange to a more reasonable 2e7
#531
golobor
closed
1 month ago
2
how to get expected contact frequency
#530
BenxiaHu
opened
1 month ago
0
IndexError: Positional Indexers are Out-of-Bounds in Insulation Calculation
#529
g1g122
closed
1 month ago
3
cooltools.eigs_cis encountered an error
#528
LHXqwq
closed
1 month ago
0
mcool format conversion
#527
mdozmorov
closed
1 month ago
4
update cooltools in conda
#526
fys666
opened
2 months ago
0
Issue with pileup example
#525
erika-anderson
opened
2 months ago
0
Unable to install cooltools
#524
yuri-practice-only
opened
2 months ago
1
Possible bug in insulation?
#523
gdolsten
closed
2 months ago
3
cooltools insulation IndexError: positional indexers are out-of-bounds
#522
WenjuSun
closed
2 months ago
4
Cooltools Dots problem in chicken genome with external mcool file
#521
pollicipes
closed
3 months ago
1
`Matplotlib` 3.9 broken dependency
#520
nvaulin
closed
1 month ago
3
cooltools virtual4c
#519
BenxiaHu
opened
3 months ago
4
cooltools.expected_cis output does not have the 'dist_bp' column
#518
danobaji
closed
4 months ago
2
change v0.6.2 to v0.7.0 in changelog as well
#517
Yaoyx
closed
4 months ago
0
Support pandas 2
#516
nvictus
closed
4 months ago
0
update version and changelog
#515
Yaoyx
closed
4 months ago
0
saddle plot
#514
BERICP01
closed
4 months ago
1
Support newer pandas (>2) and python (>3.10) versions
#513
thomas-reimonn
closed
4 months ago
0
dist_bp and contact_frequency fields missing from CVD function.
#512
ratheraarif
closed
4 months ago
7
Issue with scoring_and_histogramming_step: ValueError: There are la_exp.donut.value in (8192.0, inf], please check the histogram
#511
satvikgunjala
opened
5 months ago
3
logo
#510
gfudenberg
closed
6 months ago
0
first diagonal NaNs for smoothed expected_cis
#509
gfudenberg
opened
6 months ago
0
cooltools.dots runs under different conda environments
#508
Jiangyuan-Liu
closed
6 months ago
2
allow alternate reductions for aggregation across diagonals
#507
gfudenberg
opened
6 months ago
0
synchronize CLI and API defaults for get_expected_cis smoothing & aggregation
#506
gfudenberg
opened
6 months ago
0
migrate log-smoothing to mini-library
#505
gfudenberg
opened
6 months ago
2
adaptive coarsegrain returns numpy attribute error
#504
danobaji
closed
4 months ago
0
insulation & edge effects: consider masking?
#503
gfudenberg
opened
6 months ago
0
snippers: order of "select" and "snip" matters, but should it
#502
sergpolly
opened
6 months ago
0
Include smoothed count in cvd table
#501
Yaoyx
closed
6 months ago
4
Include smoothed count in cvd table
#500
Yaoyx
closed
6 months ago
0
1. use n_elem for calculating count.avg 2. store count.avg.smoothed and count.avg.smoothed.agg in cvd table
#499
Yaoyx
closed
6 months ago
0
cooltools.virtual4c does not write valid .bw files
#498
StrohD
closed
6 months ago
2
Cross score sandbox fixes
#497
agalitsyna
closed
6 months ago
0
fetch genomic feature issue when trying dots & focal enrichment
#495
yingsun-ucsd
closed
6 months ago
36
Error Running compute-saddle CLI
#494
GregZs
closed
7 months ago
8
Update _numutils.pyx
#493
vishalt12345
opened
7 months ago
2
Refactor snipping
#492
sergpolly
closed
7 months ago
0
pileup around centromeres
#491
ratheraarif
opened
7 months ago
16
Needs a "cool" logo
#490
thomas-reimonn
opened
7 months ago
0
Add pool decorator to functions
#489
Yaoyx
closed
7 months ago
18
Added pool_decorator to functions
#488
Yaoyx
closed
7 months ago
2
Enable futures
#485
sergpolly
closed
7 months ago
0
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