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I passed ldsc --l2 a mis-formatted annot file with only SNP / annot1 / annot2 columns and got an uninterpretable error message. Should fix this.
``` python
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bulik updated
9 years ago
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Hello,
Thank you for making ldsc available !
I'm trying to do the LD score tutorial from the wiki, I downloaded the PGC bip and scz files, but I can't find the script munge_sumstats.py. I tried with…
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Hello,
For a series of phenotypes I'm getting Ratio values of 17% and even 30%. The GWAS data is not genomic-controlled. However, when I tried a GC version of the same analyses, the results were not m…