bulik ldsc issues - Githubissues

bulik / ldsc

LD Score Regression (LDSC)

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Is python 2.7 no longer available to download using code in ldsc tutorial?

#432 leoarrow1 opened 5 days ago
2
INTERCEPT FLAG

#431 zara03 opened 6 days ago
1
p values in version Version 1.0.1 are different from v 2.0.0

#430 zara03 opened 3 weeks ago
2
https://data.broadinstitute.org/alkesgroup/LDSCORE/eur_w_ld_chr.tar.bz2 download problem?

#429 zara03 opened 1 month ago
4
where can i find ENSG_coord.txt or similiar plain file in different build?

#428 yc-long opened 1 month ago
1
Causes for Ratio < 0 other than GC?

#427 tgbrooks closed 1 week ago
2
MemoryError: When running LDSCORE analysis

#426 chirrie opened 1 month ago
4
Is it necessary to use the --merge-alleles parameter when doing genetic correlation in ldsc?

#425 dqq0404 opened 1 month ago
11
Missing frequency from GWAS

#424 ariadnacilleros opened 2 months ago
1
./ldsc.py -h Illegal instruction (core dumped)

#423 xiaomu125 opened 2 months ago
1
NotImplementedError: iLocation based boolean indexing on an integer type is not available

#422 XochitlDiaz opened 2 months ago
0
lsdc :IndexError: list index out of range

#421 chirrie opened 2 months ago
6
munge_sumstats.py taking forever to complete analysis

#420 chirrie opened 2 months ago
5
rg with sample overlap

#419 Cui4399 opened 2 months ago
1
ERROR: P<1e-300

#418 jielab opened 2 months ago
3
Can't run ldsc under screen at Linux

#417 eightYao2 opened 2 months ago
2
how to get the filtered snps

#416 yingyuan830 opened 3 months ago
0
Sample size with repeated observations

#415 ldehoyos opened 3 months ago
1
Need LDSC file

#414 zainab-cpu opened 3 months ago
1
How to draw the visialization of the LDSC regression plot like its NG paper?

#413 leoarrow1 opened 3 months ago
3
Cell type specific analyses

#412 AEAEAESSC opened 4 months ago
1
Partitioned genetic correlation

#411 AEAEAESSC opened 5 months ago
1
correlation value higher than 1

#410 yildizkoca opened 5 months ago
1
bucket seems to be unavailable

#409 M-xiao815 opened 5 months ago
1
Error running LD score regression

#408 yildizkoca opened 6 months ago
0
Suitable w_hm3.snplist for AFR?

#407 beckse opened 7 months ago
2
Add CM and MAF file to LD Score output .gz

#406 lannandc opened 7 months ago
0
'Could not find a signed summary statistic column.')

#405 yuupei opened 7 months ago
3
，

#404 yankvss closed 7 months ago
0
1kg_eur.tar.bz2 not found

#403 kf-cuanschutz opened 8 months ago
5
Could anyone send me the "eas_ldscores.tar.bz2"? I wanted to calculate the ldsc of Asia, but I found I didn't have such file. And I can't download it from cloud. If anyone can send me it, my e-mail is chenqiwjc@gmail.com. Thank you so much.

#402 MikeKiki101 opened 8 months ago
2
how to add annotation to the baseline model???

#401 fanjiacheng-max opened 8 months ago
0
TypeError: a bytes-like object is required, not 'str'

#400 yijiesung opened 8 months ago
1
Fix indentation

#399 evlim opened 8 months ago
0
Error with 'python mtag.py -h'

#398 isobel16 closed 9 months ago
0
Error with 'python mtag.py -h'

#397 isobel16 closed 9 months ago
0
--overlap-annot does not recognize path in --annot

#396 nickorka opened 9 months ago
0
tutorial request

#395 astrid12345 opened 10 months ago
1
s-LDSC continuous annotations

#394 aiim-lab closed 9 months ago
2
Why is the number of SNPs in a cell type the same to the control's one?

#393 ohmiyajohn2 opened 10 months ago
2
IndexError: list index out of range

#392 aydanasg closed 11 months ago
1
Update munge_sumstats.py

#391 evlim opened 11 months ago
5
How to test the null hypothesis of rg=1

#390 Apprentice2 opened 11 months ago
0
Error calculating heritability

#389 DelnazRoshandel opened 11 months ago
1
Question about partitioned LDSC

#388 syuxuan opened 11 months ago
1
merge-alleles: command not found

#387 Hisewetty opened 11 months ago
0
Where to obtain "hapmap3_snps.tgz"?

#386 juditcd opened 1 year ago
2
Error: Missing some LD scores from cts files. Are you sure all SNPs in ref-ld-chr are also in ref-ld-chr-cts

#385 danyfersa opened 1 year ago
4
How to obtain the file "w_hm3.snplist.bz2"

#384 keypanqi opened 1 year ago
6
Could I set the number of chromosomes in LDSC?

#383 Tengjun0520 opened 1 year ago
0