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Hello,
As recommended in https://github.com/bcbio/bcbio-nextgen/issues/2689#issuecomment-465955157, I tried using GATK4 with CWL (Cromwell) for calling variants, using the population calling method…
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Here are my input files:
```
$ zcat SampleA.bcftools.bug.g.vcf.gz
##fileformat=VCFv4.2
##FILTER=
##reference=file://hs38DH.fa
##contig=
##contig=
##contig=
##contig=
##contig=
##contig=
#…
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I have generated a vcf from my bam file. for one position this is the vcf profile:
Reference 3315 . A G 111.008 . DP=4083;VDB=0.982276;SGB=-0.693147;RPB=0.00428885;MQB=1…
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**Server (please complete the following information):**
- Snipe-IT Version: 4.6.3
- OS: [CentOS]
- Web Server: [Apache]
- PHP Version 7.x
Hi, I'm a new user of Snipe-IT and found your syste…
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diese kann man über Main auswählen (--query=Example1, --query=Example2, ...)
Im QueryHandler sind sie jeweils als Neo4j als auch als Mongoquery hard gecodet drin.
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Hello developers,
I'm using bcftools(v1.9) mpileup on Linux-x86_64 compiled by gcc-4.8.5.
I was running bcftools mpileup in SNP/InDel calling, and found a false negative SNP. This is a complex mut…
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I used bcftools (v1.8) consensus or vcf-consensus to extract fasta sequence from XX.vcf.gz file generated from samtools mpileup & bcftools call, but got such message:
The fasta sequence does not m…
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Hello, thank you for your prompt and enthusiastic answer each time~
Recently, I am trying to add LM fusion in ASR task. And I want to check whether I am right by step by step debugging while infere…
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Using IBM MQ 6.0\. Generic RA is deployed in the application server and a web
application is also deployed. The EJB in the application creates a durable
subscriber. The appropriate topic connection fa…
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I recently updated software to samtools/bcftools-1.8 (from v 1.2). After mapping of illumina data to a references (using BWA), I use samtools to call SNPs and bcftools to produce VCF files.
While …