-
In old version (1.16.45) I could use same identification file (mgf) and fasta file and create output successfully. However, there seem to be no searchgui related problem (at least it does not give any…
-
The links of xlmod and its 'details' do not work on the OBO Foundry home page:
http://www.obofoundry.org
-
As we discuss today (PSI2018 Meeting). One of the starting points would be to change the extension of the format as proposed. I recommend starting adding possible name he and people can vote on the co…
-
@edeutsch :
In the parameters of the psm we use the `msrun` and `filename` what is the different between them.
-
Hi,
After loading a MzIdentML file (from a project that I successfully loaded into PeptideShaker 2.0.0-beta) into R, I noticed that some of the PSMs passing the FDR threshold of 0.01, had PeptideS…
-
ProteinIdentification:
required:
- proteinAccession
- startPosition
- endPosition
Is the startPosition and endPosition really required here?
We don't have it trivial…
-
The current search-metadata json contains an AnalysisSoftwareList (ASL) to list the employed engines and a SpectrumIdentificationProtocolList (SIPL) to list the used parameters.
I wanted to discuss…
-
Count files to process:
`find /users/pr/data/orbitrap_velos/Raw/17*/QC2V -name '*.raw' ! -name '*CORRUPTED*' -exec du -s {} \; | sort -n | wc -l`
192
`find /users/pr/data/orbitrap_velos/Raw/17…
-
Hi! On 3.1, I succesfully pass a metafile to msgf2pin (and it outputs `Found a meta file: metafile`). But when I use 3.4 (from bioconda), this approach doesnt seem to work anymore:
```
# msgf2pin -e…
-
Hi,
my issue is about not being able to import the mzid data (3 files) with mzML spectra (also 3 files), both exported from Proteome Discoverer 2.4 SP1, into PeptideShaker. The import ends up with th…