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In GeneDB only protein-coding genes had "characterisation status" annotated. In PomBase we should be able to assign status to a lot of the ncRNA genes as well.
Note that not all of the status designa…
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Would like to reserve a block of IDs for 5775 lnRNAs.
I suggest we let him begin at 2000 and avoid anything in the range 2000-8000
Does that sound OK?
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I do not know whether this is a desired feature?
`https://mygene.info/v3/gene/7012?fields=all` has no `ensembl` field, but it does have an ensembl id: ENSG00000270141
And these 'genes' lack hg38 coo…
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A whole of output is so huge when comprehensive analysis is done, for example, for about 1800 ncRNAs vs themselves plus about 5000 mRNAs the entire output size reaches to ~ 255GB.
The base pair seri…
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I have several papers about 4 Dicty 3′-5′ RNA polymerases that describe different functions for each. One is Dicty Thg1, which has the same tRNA guanylyltransferase activity (GO:0008193) as yeast THG1…
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I was wondering how feasible it would be to add an option for an analysis with no reference ncRNAs. That is, when I run my analysis using a reference genome from NCBI genbank, it gives an error messag…
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Whilst exporting CDS sequences as FASTA from an instance with ncRNA both the protein_coding transcripts and the non-coding ones where written to file. I expect this behaviour for the 'cDNA' export bu…
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We are aware that these files are not available and we hope to rectify this soon. You can get the Fasta via the Advanced query. See the FAQ
http://www.pombase.org/faqs/how-can-i-retrieve-sequences-n…
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RNA 3' end processing
--GONEW: rRNA polyadenylation-
The enzymatic addition of a sequence of 40-200 adenylyl
residues at the 3' end of a eukaryotic rRNA transcript.
This is implicated in the targett…
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From
https://rt.sanger.ac.uk/Ticket/Display.html?id=245834
(which I 'm closing)
Yep I didn't check the Broad RNAs manually as I didn't have time, they need refining, it is on the todo list, I will bu…