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Ubuntu 20.04.5 LTS
mamba 0.27.0
conda 22.9.0
I followed the instructions and ran the `nextflow run main.nf --download_db` command with apparent success
when I then tried to run the test comman…
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Dear,
I am trying to simulate what analysing a shorter amplicon (V3V4 444bps) from Sequel IIe HiFi reads would give.
All files are replicates of the Zymo mock community V1V9 full length amplicon.
…
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+ [x] read_taxonomy_annotate
+ [x] read_gather
+ [x] read_compare_csv
+ [ ] read_signature_describe
+ [x] read_signature_csv
* wait to implement until there is a standardized function in sour…
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Hi,
I freshly installed the git and installed mamba, nextflow and singularity in a conda env.
git version: https://github.com/PacificBiosciences/pb-16S-nf/commit/763d542c5c82adb6cff769e253ebc15f…
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Hello,
I found out that micca reads csv files from DataFrames with the index on the first column: `table = pd.read_csv(input_fn, sep='\t', index_col=0)` (line 12, micca/table.py file).
If the us…
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Hi there, have had a few new issues with latest version and now am stuck on the final issue.
nextflow.config:
```
process {
executor = 'slurm'
queue = 'defq'
}
params.dada2_cpu="256"
p…
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Hello,
I am constructing boxplots and rarefaction curves
of Shannon, Simpson, and Fisher indices
.
(Consider running with the -p meta option or finding more cont…