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Hello! Is your dataset the original brain2021 dataset and not processed?
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Hi, I am trying to use the code on a new dataset, BraTS for brain tumor segmentation. I meet one problem about the ground truth. The ground truth of this dataset is not binary, it has 4 labels.
Can …
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Running pre_MR.py only downloads the based SAM model and then:
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The npz folders are created but they are empty. I am using Brats dataset. Could you help with t…
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Hi There,
Do you plan on posting examples or workbooks for any 2D segmentation problems?
I'm having some issues trying to get predictions to work with 2D input data. The same data given in 3D to…
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Related to **brats22/nnunet/pytorch**
this is an inquiry for further explanation.
**Describe the bug**
this line of code : ` c1, c2, c3 = pred[0] > 0.4, pred[1] > 0.35, pred[2] > 0.375` in th…
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The original Brats Dataset are 3D slices, how you transform them to 2D slices like sample dataset
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We need benchmarking scripts that can characterise the behaviour of Dimble over various kinds of data (sizes, encoding, dicom, nifti etc)
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**GaNDLF Version**
gandlf 0.0.16
**Desktop (please complete the following information):**
- Tried both on Ubuntu 18.04 and on Google Colab
**How did you install GaNDLF**
pip install …
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## 🚀 Feature Request
Move code for models (ResNet, GPT, U-Net, etc.) and datasets (ImageNet, BraTS, etc.) to a separate repository.
## Motivation
Cory mentioned this to me a week ago and it h…
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I tested the code with PyTorch 1.9.0+cu111 and Python 3.7, and I divide the dataset into Group 1 https://github.com/cwmok/DIRAC/issues/2#issuecomment-1321023467
But the Tre loss is still not will, …