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On a [related ticket](https://sourceforge.net/p/geneontology/ontology-requests/11712/), we've been discussing how to shorten some long and confusing names for transcriptional repressors, e.g.
RNA pol…
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Being new to metagene analysis i have already done DEA via edger
`library("metagene")
setwd("C:/Users/nath/Documents/R/win-library/3.4/metagene/extdata")
bam_files
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Hi,
I found that some of fusion results annotated with CDS sequences but some didn't. Cloud you explain how STAR-Fusion predict the CDS sequences and why some fusions have no CDS sequences. Thank…
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http://arxiv.org/abs/1605.00017
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Hi,
I am trying to use your tool using a RefSeq annotation file in gpd format. It includes non-coding RNAs, thus fields cdsStart and cdsEnd are empty (".").
The process exits with an error, so I a…
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Hello,
I'd like to request
nuclear-transcribed lncRNA catabolic process
is_a ncRNA catabolic process
ref PMID:24493644
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Hi SO,
Some of the INSDC /regulatory_class terms currently lack a match to an SO term. Since we'd like to map all terms to SO (see issue #378 for more background), can you consider making an SO ent…
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Hello,
I would like to request a new term for small RNA (sRNA). They are
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CDS_coordinates, by chromosome - ftp://ftp.ebi.ac.uk/pub/databases/pombase/pombe/CDS_Coordinates/
exon coordinates - ftp://ftp.pombase.org/pombe/Exon_Coordinates/
see https://github.com/pombase/…
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Should GO:0035145 exon-exon junction complex (EJC) be child of GO:1990124 messenger ribonucleoprotein complex? I think the EJC is always bound to mRNA.
Only caveat is that the individual proteins or …