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It looks like ggbio causes some downstream failures with dev ggplot2 due to the switch to tidy evaluation: https://github.com/tidyverse/ggplot2/issues/2610#issuecomment-389579542
Please let us know…
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Hello,
I'm exploring designs for connectogram plots. ggbio does the right kind of thing but is tightly bound to the various bioconductor structures. I'd like to implement the same kind of capabilities…
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The eaBrowse function generates an uninformative error, when there are no significant gene sets and nr.show is set to -1. Below is the sample code:
```
#_________________
# Load packages
library…
olkap updated
6 years ago
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Hello,
First, thanks for making and maintaining ggbio. I have a de novo genome and a set of transcripts across treatments (pure, early infection, late infection) that are up or down regulated. I us…
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Hi,
The function ebrowser does not work correctly, when a dplyr library is loaded. The code below works correctly when a dplyr library is not loaded, and it gives an error when the dplyr is loaded. I…
olkap updated
6 years ago
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Hi,
I have tried using preprocessInput_snv function as given in the vignette.
vcf
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Hi,
I would like to analyse my microarray data with EnrichmentBrowser using multiple methods and multiple gene sets. When I run ebrowser function with gsea method, I get the following error:
```
Er…
olkap updated
6 years ago
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Hi,
Here is how I am trying to create a fusion plot:
Input `fusions` object attached here: https://drive.google.com/drive/folders/1bhujaLojqN7kkLooH0bmTOyS7Kg69OQV
```
library(GenomicRanges)…
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Hi Jeffrey,
I have MeDIP-seq data(single end, average reads length is 50), but I don't konw the sequencing platform and fragment length in sequencing experiment. I want to know is there any problem…
MinS1 updated
6 years ago
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Hello,
I experience some difficulties with the plotting of VRanges objects.
I can't draw the plot with *geom = NULL* or *geom = "text"*.
*geom = "rect"* works better but fails to display indel.
…