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Hello.
The installation instruction is not full:
After "The bgzip and tabix utilities are provided by HTSlib. ... you may wish to install these utilities by hand by":
```
cd bcftools-1.x/htslib-1.x/
…
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The remaining dependencies let we need to patch are:
- [ ] openssl
- [ ] libdeflate
The goal is to patch older htslib and samtools releases.
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From #44
Samtools, BCFTools, HTSlib: https://github.com/UCL-RITS/rcps-buildscripts/issues/532
Samtools, Bwa, Bedtools, Vcftools, picard, GATK (requested by Biosciences) https://ucldata.atlassia…
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### Are you using the latest version of [samtools](https://github.com/samtools/samtools/releases/latest) and [HTSlib](https://github.com/samtools/htslib/releases/latest)? If not, please specify.
Yes,…
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Hi velocyto team,
I'm trying to install velocyto but am running into a commonly described issue when attempting to first install pysam.
Currently running python 3.6.7 on conda 4.5.11 on windows 10…
PattF updated
5 years ago
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Hi,
I want to add a new INFO field but I'm getting an error in the first record for which there's a match to annotate:
`
Assertion failed: (!inf->vptr_free), function bcf_update_info, file vcf.…
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problem, installing from scratch on our HPC fails while trying to install a perl packages:
```
Encountered problems while solving:
- package perl-encode-locale-1.05-pl526_6 requires perl >=5.26.…
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I want to split a chromesome into several parts to process them parallelly, and then merge them at last.
Now I'm using "samtools view + region" to split and "samtools merge" to merge. But there are s…
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HI,
it's my first time to use htslib ,I wanna know whether sam_read1 function can get unmapped reads in your https://gist.github.com/PoisonAlien/350677acc03b2fbf98aa ?
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There is a bottom link in the SEE ALSO section, but the command is not listed at the top of http://www.htslib.org/doc/samtools.html with all the others.