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Since we recently changed to hashing only the canonical (lexicographically smaller) version of each k-mer, we should make sure the logic for assigning the k-mer the appropriate strand of the originati…
rob-p updated
9 years ago
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You may already know about Julia Summer of Code (JSoC) 2015.
This seems to be something like the Google Summer of Code: students develop open source projects under support of their mentor funded by Go…
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The big feature for the version 1.0 release is a commitment to following Semantic Versioning ( http://semver.org/ ) where the API is the command line interface exposed by the scripts.
Therefore the …
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Why project has named "Khmer"?
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You've implemented your own k-mer counting.
scikit-learn has a great k-mer counting algorithm called the hashing vectorizer: http://scikit-learn.org/stable/modules/generated/sklearn.feature_extractio…
audy updated
10 years ago
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To the best of knowledge khmer support k value 32 and still does not hash different k-mer to the same value?