COMBINE-lab RapMap issues

COMBINE-lab / RapMap

Rapid sensitive and accurate read mapping via quasi-mapping

GNU General Public License v3.0

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issues

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Portable cpuRelax

#49 mr-c opened 4 years ago
0
map multiple pair-end reads file

#48 xiaoyezao opened 4 years ago
0
-u always active, unaligned reads cause parse error in samtools

#47 jmcasc opened 5 years ago
2
mateIsFwd never gets a value set for unpaired hits

#46 jenni-westoby opened 5 years ago
2
textLen_ is uninitialised in the function lce()

#45 jenni-westoby closed 5 years ago
1
Please support spdlog 1.2

#44 tillea opened 5 years ago
0
Any experiences on using RapMap for downstream variant calling

#43 inti opened 5 years ago
0
What is the behavior of quasimapping when reads overlap multiple transcripts?

#42 nachocab opened 6 years ago
0
Build time tests are failing on mips64el architecture

#41 tillea opened 6 years ago
0
Question: Unassigned Reads

#40 Simon-Coetzee opened 7 years ago
0
I'm failing to compile release 0.5

#39 darachm opened 7 years ago
4
SAM format issue

#38 darachm closed 7 years ago
9
Transcriptome clustering

#37 hmontenegro closed 7 years ago
1
Update README.md

#36 mlrdk closed 7 years ago
1
Quasi-mapping and gene fusion detection

#35 tetianakh opened 7 years ago
0
Are there windows binaries?

#34 eead-csic-compbio closed 7 years ago
1
Refactor

#33 rob-p closed 7 years ago
0
Mapping to repetitive regions

#32 mdshw5 opened 7 years ago
1
Please state clear license and copyright

#31 satta closed 7 years ago
3
Update README.md

#30 k3yavi closed 7 years ago
0
Develop

#29 rob-p closed 8 years ago
0
Develop

#28 rob-p closed 8 years ago
0
Merge master back to develop

#27 rob-p closed 8 years ago
0
Develop

#26 rob-p closed 8 years ago
0
Merge readme changes

#25 rob-p closed 8 years ago
0
Bring develop to parity with merged master

#24 rob-p closed 8 years ago
0
Merge changes from develop into master

#23 rob-p closed 8 years ago
0
remove scaffold ?

#22 CTLife closed 7 years ago
2
quasimapping, second read always gets not primary flag

#21 mikelove closed 8 years ago
10
Illegal instruction with prebuilt binary

#20 roryk closed 8 years ago
34
Empty reads cause premature termination

#19 roryk closed 8 years ago
4
Fix the help string for the pseudomap --index option.

#18 roryk closed 8 years ago
2
What is the mean of reference transcriptome fasta sequence ?

#17 CTLife closed 8 years ago
2
How to determine the length of k-mer to index ?

#16 CTLife closed 8 years ago
3
FindJellyfish.cmake finds cereal, not jellyfish

#15 rekado closed 8 years ago
3
Add a Gitter chat badge to README.md

#14 gitter-badger closed 8 years ago
0
files generated by RapMap produce inaccurate CIGAR strings

#13 twall2014 closed 8 years ago
11
Output final hitrate (useful for QC)

#12 vals closed 8 years ago
1
Fixing problems with no mappings

#11 vals closed 8 years ago
1
Fix CIGAR clipping length error

#10 vals closed 8 years ago
1
Samtools fails parsing SAM due to CIGAR and query sequence are of different length

#9 vals closed 8 years ago
2
Output NH tag in SAM output

#8 vals closed 8 years ago
2
Update CMakeLists.txt

#7 k3yavi closed 8 years ago
0
Figure out how to support a BSD or MIT license

#6 rob-p opened 8 years ago
3
Support different output formats

#5 rob-p closed 8 years ago
2
Explore Kallisto-esq skipping & Equivalence Class pre-computation

#4 rob-p closed 8 years ago
2
Check forward & RC logic

#3 rob-p closed 8 years ago
1
Add support for Salmon library types

#2 rob-p closed 5 years ago
7
Reduce memory usage

#1 rob-p closed 8 years ago
3