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Related to [pyTorch/nnUnet]
**Describe the bug**
When I run "python scripts/inference.py --data /data/01_3d/val --dim 3 --fold 0 --ckpt_path --amp --tta --save_preds", the program reported a bug…
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Really nice work!
I'm trying to use my private dataset to finetune the network, but it required a pkl file. I'm trying to use base_ep4k.model.pkl, but it raised an issue "KeyError: 'plans_per_stage'"…
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Here, we discuss the re-training of the `contrast-agnostic` model using the entire data that was used originally and, in addition, the EPI data.
**Method**: fine-tuning or training from scratch.
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Hi. I'm currently using the the muscle_adipose_tissue pipeline and it works perfectly.
However, I run into some issues when trying to use the spine_muscle_adipose_tissue and liver_spleen_pancreas pip…
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Hi Fabian,
Thank you for this excellent tool!
I have a question regd. just the data pre-processing part. I am looking to train a model for brain tumor segmentation using nnunet. I am using all t…
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It looks like `nnunetv2` broke something once again. :sweat_smile:
```
File "/home/runner/sct_0.0/spinalcordtoolbox/deepseg/inference.py", line 27, in
import spinalcordtoolbox.deepseg.nnu…
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Hello ,
I read given Documents and provide good document details for understanding logic parts.
i have some different type of label Like
1) only cover Color
2) only cover Size/Shape
3) onl…
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Dear author, thanks for your impressive work.
Could you please offer some commands for how to pertain the mode on the totalsegmentator dataset?
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Hi Fabian,
After running HD-GLIO on data with paediatric patients with low grade gliomas, I get varying results. I know that the tool is tested on an adult population, but I wanted to know if it is…