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Running our protein-prep CLI on a supported target but using a PDB structure file directly from RCSB results in a failure see the following example:
```bash
wget https://files.rcsb.org/download/5SQ…
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Hello author,
It is impossible to create the protein embedding files because of an error while saving the file.
It seems the embeddings have different shapes and can not be saved together in a s…
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I just wanted to repost the notes on what goes into a "typical protein:ligand setup pipeline" from our meeting at MolSSI on 8 Oct 2016.
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# Contributors
* John Chodera
* Julien Michel
* Peter…
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Hi! Thank you for this amazing tool, also for the easy installation! I was wondering if there is any easy way of generating more than 5 models per case, besides looping over the execution of run_infer…
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These 4 items exist in Wikidata but aren't connected in any way. They would be useful to be able to answer questions like: What drugs could I use to inhibit the action of ABL2?
[protein kinase inhi…
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Hi all,
First of all, I apologize if this is not the proper place to ask usage questions.
Now, to the questions:
1. I have several structurally similar proteins (wild-types) and I am interest…
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Hello, I am using your pipeline to design hemoglobin binding protein. When I run the code segment "Analyzing diffusion outputs," I encounter the following error. Thank you very much for your help.
…
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Hi @martin-steinegger ,
Thank you for the awesome software for structure-based clustering and sequence search. I was wondering if its possible to run the `easy-search` or `easy-cluster `commands wi…
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Not every metal-containing structure is a protein! Consider cases where they are absent.
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What does the secondary protein structure depend on?
Pheox updated
12 years ago