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Hi everyone,
Thank you a lot for the package,
I followed the tutorial where we re-did the clustering with TF,
I got interesting results however I want to keep my initial SEURAT clustering and d…
EAC-T updated
3 years ago
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When comparing the gene expression level and RAS of TF, there is a problem:
Some TFs have zero expression level in some cells, but have not zero RAS(regulon activity score) in same cells.
Is that n…
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Is it possible to run pyscenic ctx using a table with only one, the target, species? I tried, using the following table, and `*.feather` file generated using `create_cistarget_motif_databases.py`, a…
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**Describe the bug**
A clear and concise description of what the bug is.
**Steps to reproduce the behavior**
1. Command run when the error occurred:
```python
adata = sc.read( f_final_loom, v…
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Hello! First, thank you for developing this version of DoRothEA for the scanpy ecosystem! It's great, and I have enjoyed using it so far. I am running into an issue where I can't call `dorothea.load_r…
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https://mp.weixin.qq.com/s/ZCOoeQU6ysK9G8apTnfjvQ
ixxmu updated
2 years ago
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Thank you for this package.
I have no problem loading the human regulon but the mouse gives me the following error.
In [4]: dorothea_hs = dorothea.load_regulons(
...: organism='Mouse', #…
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Hello,
thank you for the great tool.
I firstly implemented R version of SCENIC for one of our smaller datasets and we got some very interesting results. So I wanted to analyze our big datasets u…
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Dear authors, thank you for developing dorothea, I am excited to use it for my research.
I would like to ask a question concerning the integration of different datasets to compare regulon activities,…
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Hi,
Thanks for providing this wonderful tools. I am just wondering what format of the inputted gene expression would be better, raw count, or normalised one, such as log2(count+1), log2(TPM+1).
…