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Hi!
I cannot figure out that why the NLR annotator is giving two NLRs in same region in the .bed and .txt files.
instance 1: sample LA4332_X1 - 2 partial genes
LA4332_X1_opera_scaffold_3643_pilon …
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Hi @hdrabkin
MGI:1913368 not a transcription factor. There are 2 annotations to GO:0001227 | DNA-binding transcription repressor activity, RNA polymerase II-specific (IMP and IDA) from PMID:184804…
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Hi,
1. I have used the `statistic` file type for a de novo detected modifications. I saw in the documentation you were using it for `level_sample_compare` , but Could not fins an example for the d…
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Hi Tim,
I'm trying to identify the motif difference between patients and healthy controls in CD4+ cells by using RunChromvar. My code is attached below.
It is strange that although the a…
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I have been using pySCENIC on a few datasets locally but have been looking into larger datasets that required me to move to an HPC infrastructure.
My dataset is not huge, around 10k cells and 17k gen…
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Hi Mette,
I run a code like this TOBIAS BINDetect --motifs /Users/xiaohan/Desktop/diffbind/jaspar.txt --signals /Users/xiaohan/Desktop/diffbind/atacorrect_test/ZR_corrected.bw /Users/xiaohan/Desktop/…
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current def
The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and …
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```
(py3k) C:\Users\Splab-PC\Dropbox\python\biopython>Python
Python 3.6.3 |Anaconda…
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using the return value from `getKmerFreq`, cluster k-mers into groups of overlapping/similar k-mers (same motif?), and find closest known weight matrix.
Useful to have an option to ignore the rever…
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Summary of email to 14 Feb 2019
Astrid:
>Did we get suggestions yet from the ‘gene regulatory region’-experts on which ontological terms and hierarchies (DAGs) we should create for the regulatory …