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fmicompbio
/
monaLisa
binned motif enrichment analysis and visualisation
https://fmicompbio.github.io/monaLisa/
GNU General Public License v3.0
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Update upload-artifact action
#80
csoneson
closed
2 weeks ago
0
issue #62, add legend with bin labels to plotMotifHeatmaps
#79
danymukesha
closed
2 weeks ago
4
Problem of plotMotifHeatmaps function - missing motif logos
#78
leezx
closed
3 months ago
4
not reproducible results - set.seed is not considered by calcBinnedMotifEnrR
#77
NathanHarmston
closed
3 months ago
2
Update actions
#76
csoneson
closed
5 months ago
0
Heatmap logo annotation broken using grid.grabExpr()
#75
IStevant
closed
5 months ago
2
using motifs from both JASPAR and homer
#74
cxtaslim
closed
6 months ago
3
omnibus test for binned approach
#73
machlabd
opened
6 months ago
0
binned enrichment analysis for sets of motifs
#72
mbstadler
opened
6 months ago
0
Adapt to new JASPAR
#71
mbstadler
closed
6 months ago
2
how to plot motifs with negative enrichment
#70
cxtaslim
closed
6 months ago
5
genome background never finished
#69
olechnwin
closed
6 months ago
3
Issue with JASPAR2024
#68
nsoriano2
closed
6 months ago
4
Error - bin() - .... 'breaks' are not unique
#67
matteozoia4
closed
1 year ago
2
The nature of the Markov models
#66
stianale
closed
1 year ago
1
dumpJaspar function
#65
Smartmandm
closed
1 year ago
3
Motif name size
#64
mbstadler
closed
1 year ago
1
how to set the text size of the motif names in plotMotifHeatmaps function?
#63
xflicsu
closed
1 year ago
2
Add legend with bin labels to heatmap
#62
csoneson
closed
1 week ago
3
Return genomic coordinates of sampled background set
#61
csoneson
opened
1 year ago
0
`show_seqlogo` option does not work in `plotMotifHeatmaps` function
#60
jmodlis
closed
2 years ago
4
Use Bioc actions, change to devel
#59
csoneson
closed
2 years ago
7
Fix seqlogo
#58
csoneson
closed
2 years ago
0
Add bioinf citation
#57
machlabd
closed
2 years ago
2
Impact of highly correlated motifs on the binned approach
#56
lengfei5
closed
2 years ago
5
results from enrichment analysis differs each run
#55
zhezhenwang
closed
2 years ago
4
Updates to monaLisa for revision
#54
mbstadler
closed
2 years ago
1
use R devel on GHA
#53
mbstadler
closed
2 years ago
0
Fix monalisa-package.R file
#52
machlabd
closed
2 years ago
0
Suppress warnings from matchPWM in regression vignette
#51
csoneson
closed
2 years ago
1
Update logo in read me
#50
machlabd
closed
2 years ago
1
Fix regression vignette
#49
csoneson
closed
2 years ago
1
Minor fixes
#48
mbstadler
closed
3 years ago
0
Kmers to motifs
#47
mbstadler
closed
3 years ago
1
sort functions for BioC submission
#46
mbstadler
closed
3 years ago
1
Various fixes
#45
csoneson
closed
3 years ago
2
Adaptations to simplify making kmer/motif plots
#44
csoneson
closed
3 years ago
2
Fix pearson resid
#43
mbstadler
closed
3 years ago
1
Rand lasso deterministic
#42
machlabd
closed
3 years ago
1
Fix breaks equal width
#41
mbstadler
closed
3 years ago
1
More to do fixes
#40
machlabd
closed
3 years ago
1
More params
#39
mbstadler
closed
3 years ago
0
A few typos
#38
csoneson
closed
3 years ago
0
Homers better looking twin
#37
mbstadler
closed
3 years ago
1
get ready for submission to Bioconductor
#36
mbstadler
closed
3 years ago
2
Add options for binned motif enrichment
#35
machlabd
closed
3 years ago
2
count k-mer pairs
#34
mbstadler
closed
4 years ago
1
Cluster kmers
#33
mbstadler
closed
4 years ago
1
add option to `kmerEnrichments` to define background
#32
mbstadler
closed
4 years ago
2
Add stabsel directionality plot 2
#31
machlabd
closed
4 years ago
3
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