-
Would it be possible to have an option to not run N4 in antsBrainExtraction.sh since I run it prior to skull stripping.
-
I run the ubuntu linux (virtual box) in win10 system (RAM=8G).
When I input fmriprep-docker,
Warning: “
-
Hi, I'm using a toolbox called Linda
> Linda is a neuroimaging toolkit for automatic segmentation of chronic stroke lesions. The method is described in Hum Brain Mapp. 2016 Apr;37(4):1405-21.
I…
-
Hello ndmg users,
I had an issue as I started to test-drive the ndmg BIDS app. I hadn't dug into the outputs extensively, but I noticed that skull-stripping of the t1-weighted image was generally q…
-
![image](https://user-images.githubusercontent.com/238759/26985852-30e45880-4cfa-11e7-89f3-f5c509b88099.png)
https://neurostars.org/t/what-to-do-when-fmriprep-goes-wrong/508
-
We'd like to develop support for atypical brains in fmriprep, including for lesion, hemispherectomy and acallosal patients, where the individual structure is radically different from neurotypical. The…
-
Start posting resources here. This thread is for shaping out all the options and ideas and documenting it here. A few necessary things:
- [x] Rough flowchart of how to run it, which tools are best,…
-
Resampling the ANTs-extracted brain mask into the FreeSurfer directory can fail pretty spectacularly. I believe this is happening because the input T1w has mismatched sform/qform affines, so ANTs skul…
-
I have been using fmriprep on our data and it is working great. I have been looking very closely at the normalization of our data to MNI space. I am concerned that my normalization could be better bu…
-
When https://github.com/poldracklab/niworkflows/issues/194 is fixed.