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Invocation looks like following:
```
(atlas) animeshs@DMED7596:~/ayu$ atlas run all
[2021-06-19 12:08 INFO] Executing: snakemake --snakefile /home/animeshs/miniconda3/envs/atlas/lib/python3.6/sit…
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For example, `msa(c('ACGT', 'ACCT'), type='dna', method='ClustalOmega')`
uses the gonnet substitution matrix!
I am not sure this should be default behaviour? I have been aligning DNA sequences w…
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Hey @rob-p and @k3yavi! Avi and I have chatted a bit about this offline, and [I've commented about this in the past](https://github.com/COMBINE-lab/salmon/discussions/629#discussioncomment-777414), bu…
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## Description of bug / unexpected behavior
trying to set up logging in a config file fails
## Expected behavior
logs written to a file
## How to reproduce the issue
Code for reproduci…
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So some take away points from the great community call today (thanks @femtomc and @cscherrer for organizing this):
1. There are plans to separate Gen's GFI to its own package at some point. CC: @alex…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
3.9.2 (tags/v3.9.2:1a79785, Feb 19 2021, 13:44:55) [MSC v.1928 64 bit (AMD64)]
CPyth…
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Nachdem Manfred mir die restlichen Daten geschickt hat, hier mal ein kleines Update:
Es gibt jetzt 66 (BL) + 29 (HD) = 95 Patienten. Von den 66 BL Patienten gibt es zu 55 ein FU File.
Nimmt man HD u…
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Add singular value decomposition rank reduction to the [Amino Acid Substitution X Locus] matrix.
This function smooths variants of a specific aa sub and lucus by computing the U * Sig * V^t matric…
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Hello!
Today I installed mikado using `conda install -c bioconda mikado` as directed [here](https://mikado.readthedocs.io/en/latest/Installation.html).
Running commands threw this error:
```
…
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I noticed the `rrule` for `det` does not use the LU factorisation. Is this intentional? Or is it implicit?
**EDIT:** implicitly both `rrule` and `frule` do use the factorisation but it could be re…