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The NextFlowPlatform doesn't escape everything it should.
Example component `src/foo/config.vsh.yaml`:
```yaml
functionality:
name: foo
arguments:
- name: "--input"
type: file
…
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Say we have a component `filter`. The CLI arguments for filter are stored under `params.filter.arguments` in NextFlow. Because (AFAIK) `nextflow.config` does not support `List`s, `arguments` is stored…
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Viash version: 0.3.0
If the code below in included in the config file of a component named 'de' and --de__species 'Mouse' is included in a Nextflow pipeline command, the parsed value of species is …
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Illustration:
```
$ viash ns test -q project_build -s src
namespace functionality platform test_name exit_code duration result
v…
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When working with a large collection of viash components, a user might want to override the 'version' value of all components with a simple command or file. @tverbeiren and I have been arguing back an…
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Here's my proposal of a new `--help` format:
Current format:
```
Options:
=
type: , , default:
attributes: , , ...
```
Proposed format:
```
…
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As soon as a file parameter with multilpe outputs is defined chown fails.
The wrapper script seems similar between single and multiple:
single:
```bash
if [ ! -z "$VIASH_PAR_OUTPUT" ]; then
…
Grifs updated
3 years ago
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The following yaml:
```yaml
functionality:
name: test
resources:
- type: bash_script
dest: script.sh
text: |
echo Hello world
platforms:
- type: native
```
…
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Hello, I read your paper in biorxiv and I found that dyngen can simulate datasets for evaluating trajectory alignment as in Figure 6.
I got interested in trying that, but I might have overlooked, I c…
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```[hendrik@GTM testbash]$ viash build config.vsh.yaml -p docker --meta
viash version: 0.2.2
config: config.vsh.yaml
platform: docker
executable:
output: …
Grifs updated
4 years ago