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dyngen
Simulating single-cell data using gene regulatory networks ðŸ“
https://dyngen.dynverse.org
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Gengerating data with high level of noise to make the cells more dispersed after dimensionality reduction.
#59
zxcaden
opened
2 months ago
0
How can I generate data with a high dimensional normal distribution?
#58
caodudu
opened
3 months ago
0
Bugfix: simulation_type_knockdown with multiple genes
#57
LouiseDck
opened
6 months ago
0
Incompatible Tibble sizes when generating knockdown model
#56
YinoZ
opened
9 months ago
0
Prepare for upcoming Seurat v5 release
#55
Gesmira
opened
11 months ago
2
Method to concatenate two models with different trajectories
#54
XiaPoppy
opened
1 year ago
0
Any possibility for adjustment of batch strength during batch effect simulation?
#53
XiaPoppy
opened
1 year ago
0
Where is the GRN stored?
#52
rcannood
closed
1 year ago
2
Ground truth expression trends for mol_mrna in different cell lineages
#51
spriyansh
opened
1 year ago
1
Interpretation of HK genes and Target genes
#50
spriyansh
closed
1 year ago
1
Can't open anndata object
#49
sarajimenez
closed
1 year ago
3
Require igraph version >=1.3.0
#48
george-hall-ucl
closed
1 year ago
2
generate_cells error in `vectbl_as_row_location()`
#47
cameronraysmith
opened
1 year ago
0
dyngen removed from CRAN
#46
scottgigante-immunai
closed
1 year ago
2
Simultaneously knockout multiple genes
#45
masastat
opened
2 years ago
0
x or y has vectors with zero standard deviation; consider setting use_nan = TRUE
#44
Pinolinoo
opened
2 years ago
5
Issue Running generate_dataset()
#43
Pinolinoo
opened
2 years ago
2
Cholmod error 'problem too large' after cell simulation
#42
christinedien
opened
2 years ago
0
rstudio crashes when running dyngen
#41
Pinolinoo
opened
2 years ago
0
Correlation of cells between datasets with different kinetics
#40
No2Ross
opened
2 years ago
0
Questions about differential expressed genes
#39
hiuchi
opened
2 years ago
0
Can not produce the same count matrix when seed is the same
#38
duohongrui
closed
2 years ago
3
kinetics_noise_none()
#37
lila167
opened
2 years ago
2
function 'Rcpp_precious_remove' not provided by package 'Rcpp
#36
lila167
opened
2 years ago
2
dyngen 1.0.3
#35
rcannood
closed
2 years ago
0
Using `experiment_synchronised`
#34
ntanmayee
closed
3 years ago
3
fix doi badge
#33
rcannood
closed
3 years ago
0
dyngen 1.0.2
#32
rcannood
closed
3 years ago
1
Estimate fate probabilities for sampled cells
#31
zsteve
closed
2 years ago
3
.
#30
DriessenA
closed
3 years ago
0
dyngen 1.0.1
#29
rcannood
closed
3 years ago
1
`dynwrap` should be an `Imports` dependency, not `Suggests`
#28
scottgigante
closed
3 years ago
8
dyngen 1.0.0
#27
rcannood
closed
3 years ago
1
simulation_type_knockdown adds more cells to KO
#26
HectorRDB
closed
2 years ago
11
simulation_type_knockdown no multiplier effect
#25
HectorRDB
closed
3 years ago
2
Merge dyngen 0.4.1
#24
rcannood
closed
3 years ago
2
failure to install
#23
jmaggiore
closed
3 years ago
2
GRN without repressions
#22
koenvandenberge
closed
4 years ago
2
dyngen 0.4.0
#21
rcannood
closed
4 years ago
1
making datasets for trajectory alignment
#20
Rsugihara01
closed
3 years ago
3
Rnav ratio new
#19
zouter
closed
4 years ago
0
dyngen 0.3.0
#18
rcannood
closed
4 years ago
0
documentation
#17
koenvandenberge
closed
4 years ago
6
generate_gold_standard returns an error
#16
Marius1311
closed
3 years ago
3
Simulate differing kinetics
#15
LouiseDck
closed
4 years ago
3
Devel
#14
rcannood
closed
4 years ago
0
Example does not work
#13
mvinyard
closed
4 years ago
2
Devel
#12
rcannood
closed
5 years ago
0
It might be interesting to just integrate with the futures package here. I always use it now instead of the parallel package etc. I think it has better support long term
#11
zouter
closed
4 years ago
1
dyngen 0.2.0
#10
rcannood
closed
5 years ago
4
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