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I never encounter this error before, it was always working precedently.
I did .R version updates and Seurat updates as well,
I already looked into the Matrix and SeuratObject packages but it doesn'…
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Hello,
Thanks for developing ArchR. I have a question related to the getMarkerfeatures() function to do pairwise testing between groups. I want to compare the accessibility between two cell types a…
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Hello,
I would like to create a new `ChromatinAssay` with a `MotifObject` but am running into an error.
I first created a `MotifObject` using `motifObj = CreateMotifObject(data = motifMatchesMa…
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Thanks for developing such a great tools!
I have some questions about the preprocessing of scATAC data: Due to memory limitations, I used ArchR to output 50,000 variable peaks as the input matrix.
…
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Thank you for the package to convert an ArchRProject a SeuratObject!
I have a question about fragments_dir in function ArchR2Signac. Could you provide an example of fragments_dir for the ArchRProje…
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An error occurred when I used addDoubletScores .
`doubScores
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Hi,
I am looking to use Seurat v5 to perform RPCA integration on SCTransform normalized data. My dataset contains hashtags to mark cell-types in pooled samples, and previously I have used this info…
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Hello! Where is the example of spatial transcriptome and ATAC integration? I didn't find this part in your tutorial. Thank you for your help.
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I would like to use a larger tile matrix.
I'm running
```
inputFiles
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**Describe the bug**
I try to add an expression matrix from 10x single cell multiome analysis following the step from this tutorial : https://www.hdsu.org/sincellTE_2022/session2/01_multiome_ArchR.ht…