gao-lab GLUE issues - Githubissues

gao-lab / GLUE

Graph-linked unified embedding for single-cell multi-omics data integration

MIT License

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issues

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An error in running permutation test for multi-omic data

#125 HelloWorldLTY opened 1 month ago
0
Example datasets are not downloadable

#124 Hw-31016 opened 1 month ago
0
Array of nans when running scglue.models.fit_SCGLUE

#123 sanikadeshmukh3 opened 1 month ago
0
scglue.data.get_gene_annotation gives many NaN values.

#122 oldvalley49 opened 2 months ago
5
Error on scglue.genomics.rna_anchored_guidance_graph: not all features are strand specific!

#121 Freedom04 opened 3 months ago
1
How to improve integration

#120 fe4960 opened 4 months ago
2
Not able to submit multiple jobs running scglue

#119 piyushjo15 closed 3 months ago
4
get_gene_annotation returns Nan

#118 fafa92 opened 5 months ago
3
KeyError at Draft a coexpression-based network

#117 yolcasmar closed 5 months ago
2
Question about preprocessing ATAC-Seq

#116 luglilab opened 5 months ago
4
KeyError: '__scglue__'

#115 OswaldoBornemann closed 7 months ago
2
Add functions for integrating CITE-seq data

#114 HelloWorldLTY opened 7 months ago
1
No such kernel named ir_4.0.2

#113 Khalid-Usman closed 5 months ago
1
Very Frustrating

#112 Khalid-Usman closed 8 months ago
2
if this can be used for metabolome

#111 lvmt closed 8 months ago
2
Question about TF motif/ChIP-seq data In tuturial

#110 xuzhougeng closed 8 months ago
1
Error on scglue.genomics.rna_anchored_guidance_graph

#109 travilucas opened 9 months ago
4
Does LSI require all peaks for optimal results, especially when dealing with ultra-scale datasets?

#108 YH-Zheng opened 10 months ago
5
Fix boxplot function KeyError

#107 aqlkzf opened 10 months ago
0
Error in `reduceDimension` function due to multiple values in `@expressionFamily@vfamily`

#106 aqlkzf closed 8 months ago
1
Inconsistent File Download for ENCODE TF-human Dataset

#105 aqlkzf closed 10 months ago
2
Question about the knowledge graph

#104 sinkahak closed 8 months ago
1
Input contains NaN when LSI

#103 cynthier opened 10 months ago
11
Can glue generate cross modality data？

#102 GlancerZ opened 10 months ago
1
Error in bash

#101 Khalid-Usman opened 10 months ago
7
Update pyGenomeTracks version to 3.8 to resolve ValueError

#100 aqlkzf closed 10 months ago
0
Issue with IntervalTree ValueError in pyGenomeTracks Visualization

#99 aqlkzf closed 10 months ago
3
_EngineTerminateException error and AttributeError while running scglue.fit_SCGLUE

#98 niuhulu-rui closed 10 months ago
0
Error in guidance = scglue.genomics.rna_anchored_guidance_graph(rna, atac)

#97 niuhulu-rui closed 10 months ago
1
Unable to download Chen-2019-FRAGS2RNA.h5ad

#96 Khalid-Usman closed 10 months ago
1
Unable to install on windows 10

#95 Khalid-Usman closed 10 months ago
1
cluster analysis on the integrated data

#94 JingGuo1997 closed 10 months ago
1
how to construct guidence between scATAC data and single cell DNA methylation data

#93 YettaWang closed 10 months ago
1
ValueError when using LSI

#92 MohammadIzadi opened 1 year ago
1
About node feature in the guidance graph

#91 yuxu-1 closed 1 year ago
4
question abou pre-process of ATAC data

#90 chenc327 closed 10 months ago
2
Training with long-range guidance graph

#89 valentinwust closed 1 year ago
2
Would it be possible to ensure specific conditions are matched for a metacell between scRNA and scATAC datasets

#88 revolvefire closed 1 year ago
2
Question about PairedSCGLUEModel

#87 alitinet opened 1 year ago
6
PR for the issue when use_cell_type is not None

#86 AprilYuge closed 1 year ago
1
Early stopping during model training

#85 YangLi-Bio closed 1 year ago
3
CLUE paper reproducibility code

#84 valentinwust closed 1 year ago
6
Looking for the last step in the GLUE framework.

#83 vietdhoang closed 1 year ago
2
Recover previous glue model

#82 amachadolopez closed 1 year ago
8
Error in scglue.genomics.window_graph

#81 LalicJ closed 10 months ago
8
scglue.models.fit_SCGLUE Error

#80 fe4960 closed 1 year ago
3
Some questions on mini-batching

#79 Chengwei94 closed 1 year ago
1
Issues when use_cell_type is not None

#78 AprilYuge closed 10 months ago
5
Error in scglue.models.fit_SCGLUE() function

#77 LalicJ closed 1 year ago
0
Multiple batch variables

#76 sinkahak closed 1 year ago
2