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I'm getting this error, on the latest version - 0.5.2, when trying to run:
tsses = pybedtools.BedTool('/ucsc/Mus_musculus/UCSC/mm9/Annotation/Genes/genes.gtf')
input = metaseq.genomic_signal('input.b…
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usagi updated
10 years ago
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I get the error message global name stats not defined.
Traceback:
```
/home/jraab/virtualenvs/base/local/lib/python2.7/site-packages/metaseq/plotutils.pyc in ci(arr, conf)
229 n = len…
jraab updated
10 years ago
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Hello,
I used `pip install metaseq` and have this install log:
```
Downloading/unpacking metaseq
Downloading metaseq-0.1dev.tar.gz
Running setup.py egg_info for package metaseq
Downloading ht…
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Hi,
I have just installed metaseq with the recommended dependencies.My python version is 2.7.3.
I am using bowtie generated bam files aligned against mouse genome.
The command as recommended to read b…
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Thanks for your reply to the db issue ffrom gtf files for mm9.
Actually finallyi want to make tss plots and heatmap from my bam files.
so I created the db object
But for basic plotting checking .
All…
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i was attempting to check this out and think it would be really useful, but i'm having issues installing.
```
$ git clone git://github.com/daler/metaseq.git
Cloning into 'metaseq'...
remote: Counting…
brwnj updated
12 years ago