-
Using canu1.6 on MacOSX 10.10.5
canu -d foldername -p name genomesize=100m gnuplotTested=true -nanopore -raw "metagenomeReads.fastq"
Hi all.
I have been attempting to run canu on metagenomic…
-
We would like to discuss how best to correct richness/alpha diversity for differences in sequencing depth (total amplicons) when using the default dada2 pipeline, i.e. when using dada(, pooled = FALSE…
-
@srearl popped in to NCEAS EML Slack today with some weird emld behavior:
```r
writeLines(
as.character(
emld::as_xml(
list(additionalInfo = list(
section = list(para = "…
-
Hi everyone,
I have paired end data from illumina Miseq, 150 bp (115 after trimming). I just started with one sample to check all was good (not my first time with DADA2). I use dada2 to trim the prim…
-
Hello,
I have a project where I have paralelly sequenced 16S and the functional gene bssA (for anaerobic toluene degradation) amplicons in various microbial communities. I am developing a workflow …
-
Greetings Daniel,
When I run FBA (cobrapy) on a 2-membered community GEM, I notice that the objective value for the community is nothing more than the sum of the individual FBA values of the two GE…
-
Dear Jeff,
thank you very much for Paprica, it is a great software.
May I ask you, I was wondering if there is an easy (semi/automated) way how to group identified pathways into a higher level. I me…
-
I'm annotating a paper with @CuzickA
Alayne selected
GO:0085005 interaction with host via secreted substance released from invasive hyphae
GO:0044046 interaction with host via substance…
-
Hi, the chimera.uchime function does not work.
the mothur logfile contains :
`mothur v.1.39.5
Last updated: 3/20/2017
by
Patrick D. Schloss
Department of Microbiology & Immunology
Univers…
-
Cross-posted from https://redmine.dataone.org/issues/8775
Bryce Mecum wrote:
> In the current system, EML documents with taxonomic coverage get indexed into fields such as `species` if they contai…