-
This issue aims to open a brief discussion about the type of registration method to be used for co-registering the axial and sagittal T2w scans as a prerequisite before training a multichannel model. …
-
sub-zh11_ses-01_sag-T2:
sub-zh11_ses-01_ax-T2:
!…
-
This thread summarizes experiments related to nnU-Netv2 [Pretraining and finetuning](https://github.com/MIC-DKFZ/nnUNet/blob/master/documentation/pretraining_and_finetuning.md#pretraining-on-the-sourc…
-
I tried to access the wanb server using the link [ https://wandb.ai/jcohenadad/mouse-zurich?workspace=user-jcohenadad](url) but I'm not allowed to connect to this project.
Maybe there is a way to…
-
After a fresh installation of napari following https://github.com/axondeepseg/napari-plugin#instructions-to-install-the-plugin, I launch napari and click on the ADS plugin, and observe the following e…
-
Currently, SCT depends on at least some version of PyTorch (CPU or GPU, either is OK) so that we can run inference on `.pt` models trained using `ivadomed`. But, some of ivadomed's models are already …
-
- [x] Train lesion segmentation model with cropped image as input @uzaymacar
- [x] Train model to segment the SC https://github.com/ivadomed/model_seg_ms_mp2rage/issues/8 @uzaymacar
- [x] Implem…
-
Here is a list of all folders:
```
ls -latd /Volumes/projects/* | head -n 100
drwx------ 1 alex staff 264 28 Sep 14:45 /Volumes/projects/ml_deep_unwrapping
drwx------ 1 alex staff 874 5…
-
From: https://github.com/ivadomed/model_seg_ms_mp2rage/blob/main/preprocessing/preprocess_data.sh
Commit: https://github.com/ivadomed/model_seg_ms_mp2rage/commit/ceb651661779896fda8a2b60dd735b0dbdb7f…
-
Create a script and/or SHELL syntax (inspiration from https://github.com/ivadomed/model_seg_ms_mp2rage/issues/56#issue-1501621673) that does:
- loop across subjects
- denoise the T2w image
- loads …