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If I run this:
./mdl-loadbiomass -biomass bio12477 -model FlatAraRecon.45632
I now get this:
> ModelDriver encountered an unrecoverable error:
```
""Creating new object failed."" at /home/seaver/M…
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I got the following error message when trying to run fbacheckgrowth. I looked for mkdir lines in the code in lib/ but could not identify which one is causing the issue.
../Model-SEED-core/bin/ModelDr…
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So the code below does not work in windows for a variety of reasons. I am proposing we include ModelDB.db in the test data directory instead of the sql file. Would this cause problems? I also suggest …
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Crashes within MFAToolkit:
```
12d298m10s $ mdl-autocomplete -model iJR904.1245
mdlautocomplete
Creating problem directory: 7
Creating list of inactive reactions: /Users/devoid/Desktop/Core/data/Reac…
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I have started to generate models in my local ModelSEED rather than submitting to the web version of the ModelSEED, since that service seems to be slow and potentially unreliable in returning complete…
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Trying to run this command:
./bc-loadmedia -media Succinate-Minimal.MEDIA.MEDIA
resulted in this error:
Error text printed below:
> ModelDriver encountered an unrecoverable error:
at /Library/Pe…
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Ran the following command to get this today.
./mdl-createmodel -genome Seed314266.4 -overwrite 1mdlcreatemodel
2012-02-28 13:09:40: Request failed with code=500 msg=read timeout, sleeping 1 and retr…
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I created a new model today, ran the reconstruction algorithm, and then tried to autocomplete only to get the following error:
tsf-wpa-1-2129:bin jamesclulow$ ./mdl-autocomplete -model Seed392499.4.4…
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So let's set a baseline here for improving `Biochemistry::save()` performance:
```
my $bio = ModelSEED::MS::Biochemistry->new($data);
$bio->save();
> Init: 23.2144618034363
> Load: 0.003133058547973…
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When I run:
`bin/ModelDriver importmodel?MetaCyc?83333.1?seaver?/Users/seaver/Documents/Projects/Model_Import_Files/?1?/Users/seaver/Software/ModelSEEDCordata/KEGGimport.45632/0/biochemistry/`
I get…