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Don't store gene name and product in the session, get it from the Track or Chado databases.
Original comment by: kimrutherford
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Formats list:
- [ ] gbk (http://www.ncbi.nlm.nih.gov/genbank/samplerecord/).
- [ ] gff version 3 (http://www.sequenceontology.org/gff3.shtml)
These 2 are widely used in sequence/genomic annotation. I…
RNAer updated
9 years ago
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**Reported by eilbeck on 2008-04-28 17:12 UTC**
At the GOC meeting last week the gene annotation file went thru a review.
It was decided that col 12 (DB_Object_type) needs more SO terms to describe th…
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RNA genes, e.g
snu4 not appearing on tool,
...we can offere all of the same options for RNA, alter we can be a bit cleverer and not show evidence like "2 hybrid" for instance
Original comment by: V…
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In [fission-yeast-phenotype:#1988], Val suggested making these terms obsolete on the grounds that "small RNA" is not specific enough to add information:
FYPO:0003261 ! decreased small RNA level
FYPO:…
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Hi,
We have been working on adding some new terms to represent RNA
surveillance, particularly the polyadenylation-dependent forms that
occur in eukaryotic nuclei. We've tried to add terms to cover th…
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Hi,
I'd like to know the purpose of this term:
GO:0043633 - modification-dependent RNA catabolic process
Currently it has only one child:
GO:0043634 - polyadenylation-dependent ncRNA catabolic pro…
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Hi,
When I used categorize_ncRNAs.pl to categorize the "_putative.class.ncRNAs.gtf" into "_class.ncRNAs.gtf" and "noClass.ncRNAs.gtf" files I got different results in different runs. And also most of…
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Jimmy and I prototyped related GFF3 tidy scripts for the iLocus analysis. Once the VIGA analysis confirms things have worked like we hoped, it shouldn't be too difficult to implement this functionalit…
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Add ability to associate and display sequences associated with features.
Reads with sequence, proteins with sequence, ncRNAs with folds, ?
[original LH ticket](http://jbrowse.lighthouseapp.com/proje…