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Can I use output from cellranger-arc in cellbender ?
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https://mp.weixin.qq.com/s/fIRVMNHFcffCuCzh_Qozhw
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https://mp.weixin.qq.com/s/jR2OdJQPfBAfxSLSYPyqUw
ixxmu updated
11 months ago
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**Describe the bug**
pyrodigal does not work:
```
[ERROR: Pyrodigal could not be executed! Please make sure Pyrodigal is installed and executable or skip requiring workflow steps via via '--skip-c…
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I am trying to use scVelo to process matrix data from Alevin-Fry to compute RNA velocities for a scRNA-seq project. I am following the tutorial outlined here: [](https://scvelo.readthedocs.io/en/sta…
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Hello @tinyi and Team,
I'm getting similar errors while running `plot.cor.phi` and `plot.scRNA.outlier` functions. I've followed the vignette (Tutorial: bulk RNA-seq deconvolution using BayesPrism by…
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I am working through an example processing pipeline for Seurat using my own data. I have got up to the stage for identifying conserved cell type markers. However when I try and set the DefaultAssay() …
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Hi!
I am trying to run your tool with splitseq technology however cellranger does not run properly.
First, I did not have I1 and I2 so I followed the guideline on your main page and created dumm…
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Hi,
I was running the [Integrating scRNA-seq and scATAC-seq data demo](https://satijalab.org/seurat/articles/atacseq_integration_vignette.html) with Seurat v3, and the program quits with a segmen…
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https://mp.weixin.qq.com/s/JMfadsjf6y_mV7ZZAgvjjQ