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Thanks for a really helpful msa R package!
Say I align to a reference that has 'flexible' nucleotides. For example Y can be C or T (all codes here https://www.bioinformatics.org/sms/iupac.html). Ex…
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So, I'm kind of banging my head against a wall with something, and I wanted to see if anyone has any clever solutions.
I have a project which builds in CMake, and the `cmake` commands are actually …
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Dear collaborators,
I have installed the lightdock in google colab. It is working fine, excluding the cluster analysis.
In the cluster analysis, I add the command:
!lgd_cluster_bsas.py swarm_37/g…
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### Setup
Biopython 1.78
Python 3.7
OSX
Hello there,
This is more a question than an issue.
I am trying to parallelize pairwise alignments using multiprocessing
For this to be efficien…
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We currently have dense_matrix_type for getting the type of a matrix that has been constructed using the function matrix.
We should also have functions dense_poly_type and dense_series_type.
Lat…
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In reviewing the example of forced convection #162, some suggestions were made to reduce the five-minute run-time. These concern the Navier–Stokes solver rather than forced convection _per se_,…
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Hi,
Clinker looks fantastic but I'm having trouble getting it going. I'm using a mac, I used pip to install Clinker:
$ pip install Clinker
Requirement already satisfied: Clinker in /anaconda3/l…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
>>> import sys; print(sys.version)
3.8.6 (default, Sep 30 2020, 04:00:38)…
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Please make sure that this is a feature request. As per our [GitHub Policy](https://github.com/tensorflow/tensorflow/blob/master/ISSUES.md), we only address code/doc bugs, performance issues, feature …
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The **PDB file residue numbering** tool often gives erroneous results.
For example, when uploading the ADRB1 structure 4BVN the number 3.32 (aspartate) is assigned to A189 (current live version) or N…